dasf.ml.dl.pytorch_lightning

Classes

TorchDataLoader	A DataModule standardizes the training, val, test splits, data preparation and transforms. The main
NeuralNetClassifier	Class representing a Fit operation of the pipeline.

Functions

run_dask_clustered(func[, client])
fit(model, X, y, max_iter, accel, strategy, devices, ngpus)

Module Contents

class dasf.ml.dl.pytorch_lightning.TorchDataLoader(train, val=None, test=None, batch_size=64)

Bases: pytorch_lightning.LightningDataModule

A DataModule standardizes the training, val, test splits, data preparation and transforms. The main advantage is consistent data splits, data preparation and transforms across models.

Example:

class MyDataModule(LightningDataModule):
    def __init__(self):
        super().__init__()
    def prepare_data(self):
        # download, split, etc...
        # only called on 1 GPU/TPU in distributed
    def setup(self, stage):
        # make assignments here (val/train/test split)
        # called on every process in DDP
    def train_dataloader(self):
        train_split = Dataset(...)
        return DataLoader(train_split)
    def val_dataloader(self):
        val_split = Dataset(...)
        return DataLoader(val_split)
    def test_dataloader(self):
        test_split = Dataset(...)
        return DataLoader(test_split)
    def teardown(self):
        # clean up after fit or test
        # called on every process in DDP

Attributes:

prepare_data_per_node:

If True, each LOCAL_RANK=0 will call prepare data. Otherwise only NODE_RANK=0, LOCAL_RANK=0 will prepare data.

allow_zero_length_dataloader_with_multiple_devices:

If True, dataloader with zero length within local rank is allowed. Default value is False.

_train

_val

_test

_batch_size

prepare_data()

Use this to download and prepare data. Downloading and saving data with multiple processes (distributed settings) will result in corrupted data. Lightning ensures this method is called only within a single process, so you can safely add your downloading logic within.

Warning

DO NOT set state to the model (use setup instead) since this is NOT called on every device

Example:

def prepare_data(self):
    # good
    download_data()
    tokenize()
    etc()

    # bad
    self.split = data_split
    self.some_state = some_other_state()

In a distributed environment, prepare_data can be called in two ways (using prepare_data_per_node)

1. Once per node. This is the default and is only called on LOCAL_RANK=0.

2. Once in total. Only called on GLOBAL_RANK=0.

Example:

# DEFAULT
# called once per node on LOCAL_RANK=0 of that node
class LitDataModule(LightningDataModule):
    def __init__(self):
        super().__init__()
        self.prepare_data_per_node = True


# call on GLOBAL_RANK=0 (great for shared file systems)
class LitDataModule(LightningDataModule):
    def __init__(self):
        super().__init__()
        self.prepare_data_per_node = False

This is called before requesting the dataloaders:

model.prepare_data()
initialize_distributed()
model.setup(stage)
model.train_dataloader()
model.val_dataloader()
model.test_dataloader()
model.predict_dataloader()

setup(stage=None)

Called at the beginning of fit (train + validate), validate, test, or predict. This is a good hook when you need to build models dynamically or adjust something about them. This hook is called on every process when using DDP.

Args:

stage: either 'fit', 'validate', 'test', or 'predict'

Example:

class LitModel(...):
    def __init__(self):
        self.l1 = None

    def prepare_data(self):
        download_data()
        tokenize()

        # don't do this
        self.something = else

    def setup(self, stage):
        data = load_data(...)
        self.l1 = nn.Linear(28, data.num_classes)

train_dataloader()

Implement one or more PyTorch DataLoaders for training.

Return:

A collection of torch.utils.data.DataLoader specifying training samples. In the case of multiple dataloaders, please see this section.

The dataloader you return will not be reloaded unless you set :paramref:`~pytorch_lightning.trainer.Trainer.reload_dataloaders_every_n_epochs` to a positive integer.

For data processing use the following pattern:

• download in prepare_data()

• process and split in setup()

However, the above are only necessary for distributed processing.

Warning

do not assign state in prepare_data

• fit()

• prepare_data()

• setup()

Note:

Lightning adds the correct sampler for distributed and arbitrary hardware. There is no need to set it yourself.

Example:

# single dataloader
def train_dataloader(self):
    transform = transforms.Compose([transforms.ToTensor(),
                                    transforms.Normalize((0.5,), (1.0,))])
    dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform,
                    download=True)
    loader = torch.utils.data.DataLoader(
        dataset=dataset,
        batch_size=self.batch_size,
        shuffle=True
    )
    return loader

# multiple dataloaders, return as list
def train_dataloader(self):
    mnist = MNIST(...)
    cifar = CIFAR(...)
    mnist_loader = torch.utils.data.DataLoader(
        dataset=mnist, batch_size=self.batch_size, shuffle=True
    )
    cifar_loader = torch.utils.data.DataLoader(
        dataset=cifar, batch_size=self.batch_size, shuffle=True
    )
    # each batch will be a list of tensors: [batch_mnist, batch_cifar]
    return [mnist_loader, cifar_loader]

# multiple dataloader, return as dict
def train_dataloader(self):
    mnist = MNIST(...)
    cifar = CIFAR(...)
    mnist_loader = torch.utils.data.DataLoader(
        dataset=mnist, batch_size=self.batch_size, shuffle=True
    )
    cifar_loader = torch.utils.data.DataLoader(
        dataset=cifar, batch_size=self.batch_size, shuffle=True
    )
    # each batch will be a dict of tensors: {'mnist': batch_mnist, 'cifar': batch_cifar}
    return {'mnist': mnist_loader, 'cifar': cifar_loader}

val_dataloader()

Implement one or multiple PyTorch DataLoaders for validation.

The dataloader you return will not be reloaded unless you set :paramref:`~pytorch_lightning.trainer.Trainer.reload_dataloaders_every_n_epochs` to a positive integer.

It’s recommended that all data downloads and preparation happen in prepare_data().

• fit()

• validate()

• prepare_data()

• setup()

Note:

Lightning adds the correct sampler for distributed and arbitrary hardware There is no need to set it yourself.

Return:

A torch.utils.data.DataLoader or a sequence of them specifying validation samples.

Examples:

def val_dataloader(self):
    transform = transforms.Compose([transforms.ToTensor(),
                                    transforms.Normalize((0.5,), (1.0,))])
    dataset = MNIST(root='/path/to/mnist/', train=False,
                    transform=transform, download=True)
    loader = torch.utils.data.DataLoader(
        dataset=dataset,
        batch_size=self.batch_size,
        shuffle=False
    )

    return loader

# can also return multiple dataloaders
def val_dataloader(self):
    return [loader_a, loader_b, ..., loader_n]

Note:

If you don’t need a validation dataset and a validation_step(), you don’t need to implement this method.

Note:

In the case where you return multiple validation dataloaders, the validation_step() will have an argument dataloader_idx which matches the order here.

test_dataloader()

Implement one or multiple PyTorch DataLoaders for testing.

For data processing use the following pattern:

• download in prepare_data()

• process and split in setup()

However, the above are only necessary for distributed processing.

Warning

do not assign state in prepare_data

• test()

• prepare_data()

• setup()

Note:

Lightning adds the correct sampler for distributed and arbitrary hardware. There is no need to set it yourself.

Return:

A torch.utils.data.DataLoader or a sequence of them specifying testing samples.

Example:

def test_dataloader(self):
    transform = transforms.Compose([transforms.ToTensor(),
                                    transforms.Normalize((0.5,), (1.0,))])
    dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform,
                    download=True)
    loader = torch.utils.data.DataLoader(
        dataset=dataset,
        batch_size=self.batch_size,
        shuffle=False
    )

    return loader

# can also return multiple dataloaders
def test_dataloader(self):
    return [loader_a, loader_b, ..., loader_n]

Note:

If you don’t need a test dataset and a test_step(), you don’t need to implement this method.

Note:

In the case where you return multiple test dataloaders, the test_step() will have an argument dataloader_idx which matches the order here.

dasf.ml.dl.pytorch_lightning.run_dask_clustered(func, client=None, **kwargs)

dasf.ml.dl.pytorch_lightning.fit(model, X, y, max_iter, accel, strategy, devices, ngpus, batch_size=32, plugins=None, meta=None)

class dasf.ml.dl.pytorch_lightning.NeuralNetClassifier(model, max_iter=100, batch_size=32)

Bases: dasf.transforms.base.Fit

Class representing a Fit operation of the pipeline.

_model

_accel = None

_strategy = None

_max_iter

_devices = 0

_ngpus = 0

_batch_size

__trainer = False

__handler

_lazy_fit_generic(X, y, accel, ngpus)

_lazy_fit_gpu(X, y=None)

Respective lazy fit mocked function for GPUs.

_lazy_fit_cpu(X, y=None)

Respective lazy fit mocked function for CPUs.

__fit_generic(X, y, accel, ngpus)

_fit_gpu(X, y=None)

Respective immediate fit mocked function for local GPU(s).

_fit_cpu(X, y=None)

Respective immediate fit mocked function for local CPU(s).