Source code for minerva.models.ssl.vitmae

import torch
import lightning as L
from torch import nn, Tensor
from typing import Optional
from ..nets.image.vit_local import VisionTransformer, Block
from ...utils.position_embedding import get_2d_sincos_pos_embed
from einops import rearrange


[docs] class MaskedAutoEncoderViT(L.LightningModule): def __init__( self, backbone: Optional[VisionTransformer] = None, decoder_embed_dim=512, decoder_depth=8, decoder_num_heads=16, mlp_ratio=4, norm_pix_loss=False, lr: float = 1e-4, weight_decay: float = 0, ): super().__init__() self.lr = lr self.weight_decay = weight_decay self.backbone = backbone or VisionTransformer() embed_dim = self.backbone.embed_dim patch_size = self.backbone.patch_size in_channels = self.backbone.in_channels num_patches = self.backbone.patch_embed.num_patches self.decoder_embed = nn.Linear(embed_dim, decoder_embed_dim) self.mask_token = nn.Parameter(torch.zeros(1, 1, decoder_embed_dim)) self.decoder_pos_embed = nn.Parameter( torch.zeros(1, num_patches + 1, decoder_embed_dim), requires_grad=False, ) self.decoder_blocks = nn.ModuleList( [ Block( decoder_embed_dim, decoder_num_heads, mlp_ratio, qkv_bias=True, norm_layer=nn.LayerNorm, ) for _ in range(decoder_depth) ] ) self.decoder_norm = nn.LayerNorm(decoder_embed_dim) self.decoder_pred = nn.Linear( decoder_embed_dim, patch_size[0] * patch_size[1] * in_channels ) self.norm_pix_loss = norm_pix_loss self.initialize_weights()
[docs] def initialize_weights(self): pos_embed = get_2d_sincos_pos_embed( self.backbone.pos_embed.shape[-1], self.backbone.patch_embed.grid_size, True, ) self.backbone.pos_embed.data.copy_( torch.from_numpy(pos_embed).float().unsqueeze(0) ) self.backbone.pos_embed.requires_grad_(False) decoder_pos_embed = get_2d_sincos_pos_embed( self.decoder_pos_embed.shape[-1], self.backbone.patch_embed.grid_size, True, ) self.decoder_pos_embed.data.copy_( torch.from_numpy(decoder_pos_embed).float().unsqueeze(0) ) w = self.backbone.patch_embed.proj.weight.data nn.init.xavier_uniform_(w.view([w.shape[0], -1])) nn.init.normal_(self.backbone.cls_token, std=0.02) nn.init.normal_(self.mask_token, std=0.02) self.apply(self._init_weights)
[docs] def _init_weights(self, m): if isinstance(m, nn.Linear): nn.init.xavier_uniform_(m.weight) if isinstance(m, nn.Linear) and m.bias is not None: nn.init.constant_(m.bias, 0) elif isinstance(m, nn.LayerNorm): nn.init.constant_(m.bias, 0) nn.init.constant_(m.weight, 1)
[docs] def patchify(self, imgs: Tensor) -> Tensor: h, w = self.backbone.patch_embed.patch_size *_, H, W = imgs.shape assert H % h == 0 and W % w == 0 return rearrange(imgs, "B C (Hp h) (Wp w) -> B (Hp Wp) (h w C)", h=h, w=w)
[docs] def unpatchify(self, x: Tensor) -> Tensor: h, w = self.backbone.patch_embed.patch_size Hp, Wp = self.backbone.patch_embed.grid_size L = x.shape[1] assert L == Hp * Wp return rearrange( x, "B (Hp Wp) (h w C) -> B C (Hp h) (Wp w)", h=h, w=w, Hp=Hp, Wp=Wp )
[docs] def random_masking(self, x, mask_ratio): """ Perform per-sample random masking by per-sample shuffling. Per-sample shuffling is done by argsort random noise. x: [N, L, D], sequence """ N, L, D = x.shape # batch, length, dim len_keep = int(L * (1 - mask_ratio)) noise = torch.rand(N, L, device=x.device) # noise in [0, 1] # sort noise for each sample ids_shuffle = torch.argsort( noise, dim=1 ) # ascend: small is keep, large is remove ids_restore = torch.argsort(ids_shuffle, dim=1) # keep the first subset ids_keep = ids_shuffle[:, :len_keep] x_masked = torch.gather(x, dim=1, index=ids_keep.unsqueeze(-1).repeat(1, 1, D)) # generate the binary mask: 0 is keep, 1 is remove mask = torch.ones([N, L], device=x.device) mask[:, :len_keep] = 0 # unshuffle to get the binary mask mask = torch.gather(mask, dim=1, index=ids_restore) return x_masked, mask, ids_restore
[docs] def forward_encoder(self, x, mask_ratio): # embed patches x = self.backbone.patch_embed(x) # add pos embed w/o cls token x = x + self.backbone.pos_embed[:, 1:, :] # masking: length -> length * mask_ratio x, mask, ids_restore = self.random_masking(x, mask_ratio) # append cls token cls_token = self.backbone.cls_token + self.backbone.pos_embed[:, :1, :] cls_tokens = cls_token.expand(x.shape[0], -1, -1) x = torch.cat((cls_tokens, x), dim=1) # apply Transformer blocks x = self.backbone.blocks(x) return x, mask, ids_restore
[docs] def forward_decoder(self, x, ids_restore): # embed tokens x = self.decoder_embed(x) # append mask tokens to sequence mask_tokens = self.mask_token.repeat( x.shape[0], ids_restore.shape[1] + 1 - x.shape[1], 1 ) x_ = torch.cat([x[:, 1:, :], mask_tokens], dim=1) # no cls token x_ = torch.gather( x_, dim=1, index=ids_restore.unsqueeze(-1).repeat(1, 1, x.shape[2]) ) # unshuffle x = torch.cat([x[:, :1, :], x_], dim=1) # append cls token # add pos embed x = x + self.decoder_pos_embed # apply Transformer blocks for blk in self.decoder_blocks: x = blk(x) x = self.decoder_norm(x) # predictor projection x = self.decoder_pred(x) # remove cls token x = x[:, 1:, :] return x
[docs] def forward_loss(self, imgs, pred, mask): """ imgs: [N, 3, H, W] pred: [N, L, p*p*3] mask: [N, L], 0 is keep, 1 is remove, """ target = self.patchify(imgs) if self.norm_pix_loss: mean = target.mean(dim=-1, keepdim=True) var = target.var(dim=-1, keepdim=True) target = (target - mean) / (var + 1.0e-6) ** 0.5 loss = (pred - target) ** 2 loss = loss.mean(dim=-1) # [N, L], mean loss per patch loss = (loss * mask).sum() / mask.sum() # mean loss on removed patches return loss
[docs] def forward(self, imgs, mask_ratio=0.75): latent, mask, ids_restore = self.forward_encoder(imgs, mask_ratio) pred = self.forward_decoder(latent, ids_restore) # [N, L, p*p*3] loss = self.forward_loss(imgs, pred, mask) return loss, pred, mask
[docs] def _single_step(self, batch: torch.Tensor, step_name: str) -> torch.Tensor: loss, _, _ = self.forward(batch) self.log(f"{step_name}_loss", loss) return loss
[docs] def training_step(self, batch: torch.Tensor, batch_idx: int): return self._single_step(batch, "train")
[docs] def validation_step(self, batch: torch.Tensor, batch_idx: int): return self._single_step(batch, "val")
[docs] def test_step(self, batch: torch.Tensor, batch_idx: int): return self._single_step(batch, "test")
[docs] def configure_optimizers(self): return torch.optim.Adam( self.parameters(), lr=self.lr, weight_decay=self.weight_decay, betas=(0.9, 0.99), )