Index

_

__add__() (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.TransformPipeline method) __call__() (minerva.engines.engine._Engine method) (minerva.engines.patch_inferencer_engine.PatchInferencer method) (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) (minerva.losses.topological_loss.AlephPersistenHomologyCalculation method) (minerva.losses.topological_loss.PersistentHomologyCalculation method) (minerva.models.adapters.MaxPoolingTransposingSqueezingAdapter method) (minerva.models.adapters.PermuteAdapter method) (minerva.models.loaders.FromModel method) (minerva.models.loaders.FromPretrained method) (minerva.models.loaders.IntermediateLayerGetter method) (minerva.models.loaders.ModuleExtractor method) (minerva.transforms._RandomSyncedTransform method) (minerva.transforms._Transform method) (minerva.transforms.activity_image.ActivityImageTransforms method) (minerva.transforms.CastTo method) (minerva.transforms.ColorJitter method) (minerva.transforms.ContrastiveTransform method) (minerva.transforms.Crop method) (minerva.transforms.EmptyTransform method) (minerva.transforms.Flip method) (minerva.transforms.Gradient method) (minerva.transforms.GrayScale method) (minerva.transforms.Identity method) (minerva.transforms.Indexer method) (minerva.transforms.Normalize method) (minerva.transforms.PadCrop method) (minerva.transforms.Padding method) (minerva.transforms.PerlinMasker method) (minerva.transforms.random_transform._RandomSyncedTransform method) (minerva.transforms.random_transform.EmptyTransform method) (minerva.transforms.Repeat method) (minerva.transforms.Rotation method) (minerva.transforms.Solarize method) (minerva.transforms.split_transform.SplitTransform method) (minerva.transforms.Squeeze method) (minerva.transforms.tfc.TFC_Transforms method) (minerva.transforms.transform._Transform method) (minerva.transforms.transform.CastTo method) (minerva.transforms.transform.ColorJitter method) (minerva.transforms.transform.ContrastiveTransform method) (minerva.transforms.transform.Crop method) (minerva.transforms.transform.Flip method) (minerva.transforms.transform.Gradient method) (minerva.transforms.transform.GrayScale method) (minerva.transforms.transform.Identity method) (minerva.transforms.transform.Indexer method) (minerva.transforms.transform.Normalize method) (minerva.transforms.transform.PadCrop method) (minerva.transforms.transform.Padding method) (minerva.transforms.transform.PerlinMasker method) (minerva.transforms.transform.Repeat method) (minerva.transforms.transform.Rotation method) (minerva.transforms.transform.Solarize method) (minerva.transforms.transform.Squeeze method) (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.transform.Transpose method) (minerva.transforms.transform.Unsqueeze method) (minerva.transforms.TransformPipeline method) (minerva.transforms.Transpose method) (minerva.transforms.Unsqueeze method) __getattr__() (minerva.models.loaders.FromModel method) (minerva.models.loaders.FromPretrained method) __getitem__() (minerva.data.data_module_tools.SimpleDataset method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers._Reader method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.data.readers.index_reader.IndexReader method) (minerva.data.readers.LazyPaddedPatchedArrayReader method) (minerva.data.readers.multi_reader.MultiReader method) (minerva.data.readers.patched_array_reader.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) (minerva.data.readers.png_reader.PNGReader method) (minerva.data.readers.PNGReader method) (minerva.data.readers.reader._Reader method) (minerva.data.readers.tabular_reader.TabularReader method) (minerva.data.readers.tiff_reader.TiffReader method) (minerva.data.readers.TiffReader method) __iter__() (minerva.samplers.domain_sampler.RandomDomainSampler method) __len__() (minerva.data.data_module_tools.SimpleDataset method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers._Reader method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.data.readers.index_reader.IndexReader method) (minerva.data.readers.multi_reader.MultiReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) (minerva.data.readers.reader._Reader method) (minerva.data.readers.tabular_reader.TabularReader method) (minerva.samplers.domain_sampler.RandomDomainSampler method) __radd__() (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.TransformPipeline method) __reduce_ex__() (minerva.models.loaders.FromPretrained method) __repr__() (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.MinervaDataModule method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.models.loaders.FromPretrained method) (minerva.models.nets.time_series.cnns.ZeroPadder2D method) __setstate__() (minerva.optimizers.LARS method) (minerva.optimizers.lars.LARS method) __str__() (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.MinervaDataModule method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) (minerva.data.readers.png_reader.PNGReader method) (minerva.data.readers.PNGReader method) (minerva.data.readers.tiff_reader.TiffReader method) (minerva.data.readers.TiffReader method) (minerva.models.loaders.FromPretrained method) (minerva.models.nets.time_series.cnns.ZeroPadder2D method) (minerva.transforms.CastTo method) (minerva.transforms.ContrastiveTransform method) (minerva.transforms.Flip method) (minerva.transforms.Identity method) (minerva.transforms.Indexer method) (minerva.transforms.Normalize method) (minerva.transforms.PadCrop method) (minerva.transforms.Repeat method) (minerva.transforms.Squeeze method) (minerva.transforms.transform.CastTo method) (minerva.transforms.transform.ContrastiveTransform method) (minerva.transforms.transform.Flip method) (minerva.transforms.transform.Identity method) (minerva.transforms.transform.Indexer method) (minerva.transforms.transform.Normalize method) (minerva.transforms.transform.PadCrop method) (minerva.transforms.transform.Repeat method) (minerva.transforms.transform.Squeeze method) (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.transform.Transpose method) (minerva.transforms.transform.Unsqueeze method) (minerva.transforms.TransformPipeline method) (minerva.transforms.Transpose method) (minerva.transforms.Unsqueeze method) __update_dataloader_kwargs() (minerva.data.data_modules.base.MinervaDataModule static method) (minerva.data.data_modules.MinervaDataModule static method) __wrapped__ (minerva.models.loaders.FromModel attribute) (minerva.models.loaders.FromPretrained attribute)

_adjust_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _apply_metrics_per_sample (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _batch_size (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _cache_result (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _cached_run_status (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _calculate_fc_input_features() (minerva.models.nets.tfc.TFC_Backbone method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D method) (minerva.models.nets.time_series.cnns.CNN_PF_2D method) (minerva.models.nets.time_series.imu_transformer.IMUCNN method) (minerva.models.nets.time_series.inception_time.InceptionTime method) (minerva.models.nets.time_series.resnet.ResNet1DBase method) (minerva.models.nets.time_series.ts2vec_classifier.TS2VecClassifier method) _calculate_metrics() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _classification_metrics (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _combine_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _compute_base_padding() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _compute_distance_matrix() (minerva.losses.topological_loss.TopologicalLoss static method) _compute_metrics() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.tfc.TFC_Model method) _compute_output_shape() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _cosine_simililarity() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) _count_matching_pairs() (minerva.losses.topological_loss.TopologicalSignatureDistance static method) _create_backbone() (minerva.models.nets.time_series.imu_transformer.IMUCNN method) (minerva.models.nets.time_series.imu_transformer.IMUTransformerEncoder method) _create_fc() (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D method) (minerva.models.nets.time_series.cnns.CNN_PF_2D method) (minerva.models.nets.time_series.imu_transformer.IMUCNN method) (minerva.models.nets.time_series.imu_transformer.IMUTransformerEncoder method) (minerva.models.nets.time_series.inception_time.InceptionTime method) _custom_input_size (minerva.analysis.complexity_performance_analysis.ComplexityPerformanceAnalysis attribute) _data (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _dataloader_cls (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _dot_simililarity() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly static method) _DoubleConv (class in minerva.models.nets.image.unet) _Down (class in minerva.models.nets.image.unet) _Encoder (class in minerva.models.nets.image.vit) _Engine (class in minerva.engines.engine) _evaluate() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _extract_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _fit() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _freeze() (minerva.models.nets.cpc_networks.LinearClassifier method) _generate_data() (minerva.data.data_module_tools.RandomDataModule method) _generate_seed() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) _get_correlated_mask() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) _get_nonzero_cycles() (minerva.losses.topological_loss.TopologicalSignatureDistance static method) _get_pairings() (minerva.losses.topological_loss.TopologicalSignatureDistance method) _get_patches() (minerva.data.readers.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) _get_similarity_function() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) _get_sort_values() (minerva.data.readers.base_file_iterator.BaseFileIterator method) _IMUTransformerEncoder (class in minerva.models.nets.time_series.imu_transformer) _InceptionTime (class in minerva.models.nets.time_series.inception_time) _init_weights() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) _initialize_vars() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) _load_class() (minerva.models.nets.classic_ml_pipeline.SklearnPipeline static method) _loss_func() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.DeepLabV3 method) (minerva.models.nets.image.deeplabv3.DeepLabV3 method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) _model (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _model_analysis (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _ModelAnalysis (class in minerva.analysis.model_analysis) _name (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _num_workers (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _OutConv (class in minerva.models.nets.image.unet) _pad_data() (minerva.data.readers.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) _parent (minerva.losses.topological_loss.UnionFind attribute) _path (minerva.analysis.complexity_performance_analysis.ComplexityPerformanceAnalysis attribute) (minerva.analysis.model_analysis._ModelAnalysis attribute) _pipeline_id (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _predict() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _predict_split (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _process_input() (minerva.models.nets.image.vit._VisionTransformerBackbone method) _RandomSyncedTransform (class in minerva.transforms) (class in minerva.transforms.random_transform) _Reader (class in minerva.data.readers) (class in minerva.data.readers.reader) _readers (minerva.data.readers.multi_reader.MultiReader attribute) _reconstruct_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _regression_metrics (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _ResNet1D (class in minerva.models.nets.time_series.resnet) _run() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) (minerva.pipelines.Pipeline method) _save_pipeline_info() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) _save_run_status (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _select_distances_from_pairs() (minerva.losses.topological_loss.TopologicalSignatureDistance method) _select_samples() (minerva.samplers.domain_sampler.RandomDomainSampler method) _SetR_PUP (class in minerva.models.nets.image.setr) _SETRMLAHead (class in minerva.models.nets.image.setr) _SETRUPHead (class in minerva.models.nets.image.setr) _shuffle_train (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _single_step() (minerva.engines.patch_inferencer_engine.PatchInferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.SFM_BasePatch16_Downstream method) (minerva.models.nets.image.wisenet.WiseNet method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.nets.WiseNet method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) _sort_files() (minerva.data.readers.base_file_iterator.BaseFileIterator method) _test() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _test_dataloader_kwargs (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _test_dataset (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _train_dataloader_kwargs (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _train_dataset (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _trainer (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _Transform (class in minerva.transforms) (class in minerva.transforms.transform) _UNet (class in minerva.models.nets.image.unet) _Up (class in minerva.models.nets.image.unet) _val_dataloader_kwargs (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _val_dataset (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _VisionTransformerBackbone (class in minerva.models.nets.image.vit) _WiseNet (class in minerva.models.nets.image.wisenet)

A

activation_cls (minerva.models.nets.time_series.resnet.ConvolutionalBlock attribute) (minerva.models.nets.time_series.resnet.ResNetBlock attribute) active (minerva.models.nets.tfc.IgnoreWhenBatch1 attribute) ActivityImageTransforms (class in minerva.transforms.activity_image) adapter (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.nets.tfc.TFC_Backbone attribute) add_frequency() (minerva.transforms.tfc.TFC_Transforms method) adjusted (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy attribute) (minerva.analysis.metrics.BalancedAccuracy attribute) aggregate_loss() (minerva.losses.dice.DiceLoss method) AlephPersistenHomologyCalculation (class in minerva.losses.topological_loss) align_corners (minerva.utils.upsample.Upsample attribute) argmax_output (minerva.models.nets.tfc.TFC_PredicionHead attribute) attention_dropout (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) Autoencoder (class in minerva.models.ssl.autoencoder) aux_head1 (minerva.models.nets.image.setr._SetR_PUP attribute) aux_head2 (minerva.models.nets.image.setr._SetR_PUP attribute) aux_head3 (minerva.models.nets.image.setr._SetR_PUP attribute)

aux_output (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.vit._Encoder attribute) (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) aux_output_layers (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.vit._Encoder attribute) (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) aux_weights (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) avg_pooling (minerva.models.nets.time_series.resnet._ResNet1D attribute) avgpool (minerva.models.ssl.byol.BYOLProjectionHead attribute) axes (minerva.transforms.transform.Transpose attribute) (minerva.transforms.Transpose attribute) axis (minerva.transforms.Flip attribute) (minerva.transforms.Repeat attribute) (minerva.transforms.Squeeze attribute) (minerva.transforms.transform.Flip attribute) (minerva.transforms.transform.Repeat attribute) (minerva.transforms.transform.Squeeze attribute) (minerva.transforms.transform.Unsqueeze attribute) (minerva.transforms.Unsqueeze attribute)

B

backbone (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.siamese_network_wrapper.SiameseNetworkWrapper attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D_Backbone attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D_Backbone attribute) (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) (minerva.models.ssl.tnc.TNC attribute) backbone_momentum (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) backbone_names_list (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) BalancedAccuracy (class in minerva.analysis.metrics) (class in minerva.analysis.metrics.balanced_accuracy) BaseFileIterator (class in minerva.data.readers.base_file_iterator) batch_norm (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) batch_size (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.models.ssl.cpc.CPC attribute) (minerva.samplers.domain_sampler.RandomDomainSampler attribute)

BatchNorm (minerva.models.nets.image.vit.VIT_MLAHead attribute) BatchWiseBarlowTwinLoss (class in minerva.losses.batchwise_barlowtwins_loss) bidirectional (minerva.models.nets.tnc.RnnEncoder attribute) bilinear (minerva.models.nets.image.unet._UNet attribute) BINARY_MODE (in module minerva.losses.dice) block (minerva.models.nets.tfc.TFC_Conv_Block attribute) (minerva.models.nets.time_series.resnet.ConvolutionalBlock attribute) (minerva.models.nets.time_series.resnet.ResNetBlock attribute) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) blocks (minerva.models.nets.image.vit.DecoderCup attribute) (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) bottleneck_size (minerva.models.nets.time_series.inception_time.InceptionModule attribute) brightness (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) bt_loss_bs() (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss method) build_model() (minerva.models.nets.time_series.inception_time._InceptionTime method) (minerva.models.nets.time_series.inception_time.InceptionModule method) BYOL (class in minerva.models.ssl) (class in minerva.models.ssl.byol) BYOLPredictionHead (class in minerva.models.ssl.byol) BYOLProjectionHead (class in minerva.models.ssl.byol)

C

cached (minerva.samplers.domain_sampler.RandomDomainSampler attribute) calculate_metrics() (minerva.models.nets.cpc_networks.LinearClassifier method) cast_to (minerva.data.readers.tabular_reader.TabularReader attribute) CastTo (class in minerva.transforms) (class in minerva.transforms.transform) cell_type (minerva.models.nets.tnc.RnnEncoder attribute) class_token (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) classes (minerva.losses.dice.DiceLoss attribute) ClassicMLModel (class in minerva.models.nets.classic_ml_pipeline) cli_main() (in module minerva.pipelines.lightning_pipeline) clone() (minerva.pipelines.base.Pipeline static method) (minerva.pipelines.Pipeline static method) cls (minerva.models.nets.image.vit.VIT_MLAHead attribute) cls_seg (minerva.models.nets.image.setr._SETRMLAHead attribute) (minerva.models.nets.image.setr._SETRUPHead attribute) cls_token (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) CNN (class in minerva.models.nets.cpc_networks) CNN_HaEtAl_1D (class in minerva.models.nets.time_series.cnns) CNN_HaEtAl_1D_Backbone (class in minerva.models.nets.time_series.cnns) CNN_HaEtAl_2D (class in minerva.models.nets.time_series.cnns) CNN_HaEtAl_2D_Backbone (class in minerva.models.nets.time_series.cnns) CNN_PF_2D (class in minerva.models.nets.time_series.cnns) CNN_PF_Backbone (class in minerva.models.nets.time_series.cnns) CNN_PFF_2D (class in minerva.models.nets.time_series.cnns) collate_fn (minerva.data.readers.multi_reader.MultiReader attribute) ColorJitter (class in minerva.transforms) (class in minerva.transforms.transform) columns_to_select (minerva.data.readers.tabular_reader.TabularReader attribute) ComplexityPerformanceAnalysis (class in minerva.analysis.complexity_performance_analysis) compute() (minerva.analysis.complexity_performance_analysis.ComplexityPerformanceAnalysis method) (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy method) (minerva.analysis.metrics.BalancedAccuracy method) (minerva.analysis.metrics.pixel_accuracy.PixelAccuracy method) (minerva.analysis.metrics.PixelAccuracy method) (minerva.analysis.model_analysis._ModelAnalysis method) (minerva.analysis.model_analysis.TSNEAnalysis method) compute_cycles (minerva.losses.topological_loss.AlephPersistenHomologyCalculation attribute) compute_nce_loss() (minerva.models.ssl.cpc.CPC method) compute_score() (minerva.losses.dice.DiceLoss method) config (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) configure_optimizers() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.DeepLabV3 method) (minerva.models.nets.image.deeplabv3.DeepLabV3 method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) consistent_iterating (minerva.samplers.domain_sampler.RandomDomainSampler attribute)

constant_values (minerva.transforms.PadCrop attribute) (minerva.transforms.transform.PadCrop attribute) contiguous (minerva.models.adapters.PermuteAdapter attribute) contrast (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) ContrastiveTransform (class in minerva.transforms) (class in minerva.transforms.transform) conv (minerva.models.nets.cpc_networks.ConvBlock attribute) (minerva.models.nets.image.unet._OutConv attribute) (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) (minerva.models.nets.tnc.SamePadConv attribute) conv1 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.vit.DecoderBlock attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.tnc.ConvBlock attribute) conv2 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.vit.DecoderBlock attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.tnc.ConvBlock attribute) Conv2dReLU (class in minerva.models.nets.image.vit) conv3 (minerva.models.nets.image.wisenet._WiseNet attribute) conv4 (minerva.models.nets.image.wisenet._WiseNet attribute) conv5 (minerva.models.nets.image.wisenet._WiseNet attribute) conv6 (minerva.models.nets.image.wisenet._WiseNet attribute) conv7 (minerva.models.nets.image.wisenet._WiseNet attribute) conv8 (minerva.models.nets.image.wisenet._WiseNet attribute) conv_block (minerva.models.nets.time_series.resnet._ResNet1D attribute) conv_feature1 (minerva.models.nets.image.vit.DecoderCup attribute) conv_feature2 (minerva.models.nets.image.vit.DecoderCup attribute) conv_feature3 (minerva.models.nets.image.vit.DecoderCup attribute) conv_feature4 (minerva.models.nets.image.vit.DecoderCup attribute) conv_kernel (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_mid_channels (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_more (minerva.models.nets.image.vit.DecoderCup attribute) conv_num_layers (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_padding (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) ConvBlock (class in minerva.models.nets.cpc_networks) (class in minerva.models.nets.tnc) Convolutional1DEncoder (class in minerva.models.nets.cpc_networks) ConvolutionalBlock (class in minerva.models.nets.time_series.resnet) ConvTAEDecoder (class in minerva.models.nets.conv_autoencoders_encoders) ConvTAEEncoder (class in minerva.models.nets.conv_autoencoders_encoders) coords (minerva.transforms.Crop attribute) (minerva.transforms.transform.Crop attribute) cosine_schedule() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) CPC (class in minerva.models.ssl.cpc) create_from_dict() (minerva.models.nets.image.setr.SETR_PUP static method) (minerva.models.nets.SETR_PUP static method) criterion (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.losses.xtent_loss.NTXentLoss attribute) (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) Crop (class in minerva.transforms) (class in minerva.transforms.transform) crop_size (minerva.transforms.random_transform.RandomCrop attribute) (minerva.transforms.RandomCrop attribute) CSVReader (class in minerva.data.readers.csv_reader)

D

data (minerva.data.data_module_tools.SimpleDataset attribute) (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline property) data_dtype (minerva.data.data_module_tools.RandomDataModule attribute) data_shape (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.data.readers.tabular_reader.TabularReader attribute) data_X (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) data_Y (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) dataset (minerva.samplers.domain_sampler.RandomDomainSampler attribute) dataset_name (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) DataTransform_FD() (minerva.transforms.tfc.TFC_Transforms method) DataTransform_TD() (minerva.transforms.tfc.TFC_Transforms method) DCNN (class in minerva.models.nets.dcnn) deactivate_requires_grad() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) decoder (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.vit.VisionTransformer attribute) (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) decoder_blocks (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) decoder_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) decoder_norm (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) decoder_pos_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) decoder_pred (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) DecoderBlock (class in minerva.models.nets.image.vit) DecoderCup (class in minerva.models.nets.image.vit) DeepLabV3 (class in minerva.models.nets) (class in minerva.models.nets.image.deeplabv3) DeepLabV3Backbone (class in minerva.models.nets.image.deeplabv3)

DeepLabV3PredictionHead (class in minerva.models.nets.image.deeplabv3) degrees (minerva.transforms.random_transform.RandomRotation attribute) (minerva.transforms.RandomRotation attribute) (minerva.transforms.Rotation attribute) (minerva.transforms.transform.Rotation attribute) delimiter (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) depth (minerva.models.nets.time_series.inception_time._InceptionTime attribute) device (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.models.nets.tnc.RnnEncoder attribute) df (minerva.data.readers.tabular_reader.TabularReader attribute) diag_lambda (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss attribute) dice_score() (in module minerva.losses._functional) DiceLoss (class in minerva.losses.dice) DilatedConvEncoder (class in minerva.models.nets.tnc) dim (minerva.losses.negative_cossine_similatiry.NegativeCosineSimilarity attribute) direction (minerva.transforms.Gradient attribute) (minerva.transforms.transform.Gradient attribute) Discriminator_TNC (class in minerva.models.nets.tnc) domain_labels (minerva.samplers.domain_sampler.RandomDomainSampler attribute) domains (minerva.samplers.domain_sampler.RandomDomainSampler attribute) double_conv (minerva.models.nets.image.unet._DoubleConv attribute) down1 (minerva.models.nets.image.unet._UNet attribute) down2 (minerva.models.nets.image.unet._UNet attribute) down3 (minerva.models.nets.image.unet._UNet attribute) down4 (minerva.models.nets.image.unet._UNet attribute) dropout (minerva.models.nets.cpc_networks.ConvBlock attribute) (minerva.models.nets.image.setr._SETRMLAHead attribute) (minerva.models.nets.image.setr._SETRUPHead attribute) (minerva.models.nets.image.vit._Encoder attribute) (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) dropout_factor (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) dtype (minerva.transforms.CastTo attribute) (minerva.transforms.transform.CastTo attribute)

E

EmbeddingLoggerCallback (class in minerva.callback.embedding_logger_callback) EmptyTransform (class in minerva.transforms) (class in minerva.transforms.random_transform) encode_position (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) encoder (minerva.models.nets.cpc_networks.CNN attribute) (minerva.models.nets.cpc_networks.Convolutional1DEncoder attribute) (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute)

encoding_size (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) (minerva.models.nets.tnc.RnnEncoder attribute) eps (minerva.losses.dice.DiceLoss attribute) (minerva.losses.negative_cossine_similatiry.NegativeCosineSimilarity attribute) (minerva.losses.xtent_loss.NTXentLoss attribute) ExtractedModel (class in minerva.models.loaders)

F

fc (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) fc1 (minerva.models.nets.dcnn.DCNN attribute) fc2 (minerva.models.nets.dcnn.DCNN attribute) fc_input_channels (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) fc_input_features (minerva.models.nets.time_series.inception_time.InceptionTime attribute) (minerva.models.nets.time_series.resnet.ResNet1DBase attribute) (minerva.models.nets.time_series.ts2vec_classifier.TS2VecClassifier attribute) fc_num_layers (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) feature_extractor (minerva.models.nets.tnc.TSEncoder attribute) feature_preffix (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) files (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) find() (minerva.losses.topological_loss.UnionFind method) first_pad_size (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) first_padder (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) flatten (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) Flip (class in minerva.transforms) (class in minerva.transforms.transform) forward() (minerva.engines.patch_inferencer_engine.PatchInferencer method) (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss method) (minerva.losses.dice.DiceLoss method) (minerva.losses.negative_cossine_similatiry.NegativeCosineSimilarity method) (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) (minerva.losses.topological_loss.TopologicalLoss method) (minerva.losses.topological_loss.TopologicalSignatureDistance method) (minerva.losses.xtent_loss.NTXentLoss method) (minerva.models.finetune_adapters.LoRA method) (minerva.models.loaders.ExtractedModel method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder method) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder method) (minerva.models.nets.cpc_networks.CNN method) (minerva.models.nets.cpc_networks.ConvBlock method) (minerva.models.nets.cpc_networks.Convolutional1DEncoder method) (minerva.models.nets.cpc_networks.Genc_Gar method) (minerva.models.nets.cpc_networks.HARCPCAutoregressive method) (minerva.models.nets.cpc_networks.HARPredictionHead method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.cpc_networks.PredictionNetwork method) (minerva.models.nets.cpc_networks.ResNetEncoder method) (minerva.models.nets.dcnn.DCNN method) (minerva.models.nets.DeepLabV3 method) (minerva.models.nets.image.deeplabv3.DeepLabV3 method) (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone method) (minerva.models.nets.image.setr._SetR_PUP method) (minerva.models.nets.image.setr._SETRMLAHead method) (minerva.models.nets.image.setr._SETRUPHead method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.unet._DoubleConv method) (minerva.models.nets.image.unet._Down method) (minerva.models.nets.image.unet._OutConv method) (minerva.models.nets.image.unet._UNet method) (minerva.models.nets.image.unet._Up method) (minerva.models.nets.image.vit._Encoder method) (minerva.models.nets.image.vit._VisionTransformerBackbone method) (minerva.models.nets.image.vit.DecoderBlock method) (minerva.models.nets.image.vit.DecoderCup method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.image.vit.MLAHead method) (minerva.models.nets.image.vit.VisionTransformer method) (minerva.models.nets.image.vit.VIT_MLAHead method) (minerva.models.nets.image.wisenet._WiseNet method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.siamese_network_wrapper.SiameseNetworkWrapper method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.nets.tfc.IgnoreWhenBatch1 method) (minerva.models.nets.tfc.TFC_Backbone method) (minerva.models.nets.tfc.TFC_Conv_Block method) (minerva.models.nets.tfc.TFC_PredicionHead method) (minerva.models.nets.tfc.TFC_Standard_Projector method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D_Backbone method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D_Backbone method) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone method) (minerva.models.nets.time_series.cnns.ZeroPadder2D method) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder method) (minerva.models.nets.time_series.inception_time._InceptionTime method) (minerva.models.nets.time_series.inception_time.InceptionModule method) (minerva.models.nets.time_series.inception_time.ShortcutLayer method) (minerva.models.nets.time_series.resnet._ResNet1D method) (minerva.models.nets.time_series.resnet.ConvolutionalBlock method) (minerva.models.nets.time_series.resnet.ResNetBlock method) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D method) (minerva.models.nets.tnc.ConvBlock method) (minerva.models.nets.tnc.DilatedConvEncoder method) (minerva.models.nets.tnc.Discriminator_TNC method) (minerva.models.nets.tnc.ResNetEncoder method) (minerva.models.nets.tnc.RnnEncoder method) (minerva.models.nets.tnc.SamePadConv method) (minerva.models.nets.tnc.TSEncoder method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) (minerva.models.ssl.byol.ProjectionHead method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) (minerva.utils.upsample.Upsample method)

forward_decoder() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) forward_encoder() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) forward_features() (minerva.models.nets.image.vit.VisionTransformer method) forward_loss() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) forward_momentum() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) forward_once() (minerva.models.nets.siamese_network_wrapper.SiameseNetworkWrapper method) freeze_backbone (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.SimpleSupervisedModel attribute) freeze_weights() (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone method) frequency_encoder (minerva.models.nets.tfc.TFC_Backbone attribute) frequency_projector (minerva.models.nets.tfc.TFC_Backbone attribute) from_logits (minerva.losses.dice.DiceLoss attribute) FromModel (class in minerva.models.loaders) FromPretrained (class in minerva.models.loaders) full_dataset_from_dataloader() (in module minerva.data.data_module_tools) full_info (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property)

G

g_ar (minerva.models.nets.cpc_networks.Genc_Gar attribute) (minerva.models.ssl.cpc.CPC attribute) g_enc (minerva.models.nets.cpc_networks.Genc_Gar attribute) (minerva.models.ssl.cpc.CPC attribute) Genc_Gar (class in minerva.models.nets.cpc_networks) generate_gradient() (minerva.transforms.Gradient method) (minerva.transforms.transform.Gradient method) get_1d_sincos_pos_embed_from_grid() (in module minerva.utils.position_embedding) get_2d_sincos_pos_embed() (in module minerva.utils.position_embedding) get_2d_sincos_pos_embed_from_grid() (in module minerva.utils.position_embedding) get_full_data_split() (in module minerva.data.data_module_tools) get_representations() (minerva.models.nets.tfc.TFC_Backbone method)

get_signal_image() (minerva.transforms.activity_image.ActivityImageTransforms method) get_split_dataloader() (in module minerva.data.data_module_tools) global_avg_pool (minerva.models.nets.time_series.resnet._ResNet1D attribute) global_pool (minerva.models.nets.image.vit.VisionTransformer attribute) Gradient (class in minerva.transforms) (class in minerva.transforms.transform) gray (minerva.transforms.GrayScale attribute) (minerva.transforms.random_transform.RandomGrayScale attribute) (minerva.transforms.RandomGrayScale attribute) (minerva.transforms.transform.GrayScale attribute) GrayScale (class in minerva.transforms) (class in minerva.transforms.transform)

H

HARCPCAutoregressive (class in minerva.models.nets.cpc_networks) HARPredictionHead (class in minerva.models.nets.cpc_networks) head (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) head2 (minerva.models.nets.image.vit.MLAHead attribute) head3 (minerva.models.nets.image.vit.MLAHead attribute) head4 (minerva.models.nets.image.vit.MLAHead attribute) head5 (minerva.models.nets.image.vit.MLAHead attribute)

head_lr_factor (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) height (minerva.analysis.model_analysis.TSNEAnalysis attribute) hidden_dim (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) hidden_dims (minerva.models.nets.tnc.TSEncoder attribute) hidden_size (minerva.models.nets.tnc.RnnEncoder attribute) hue (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute)

I

Identity (class in minerva.transforms) (class in minerva.transforms.transform) ignore_index (minerva.losses.dice.DiceLoss attribute) IgnoreWhenBatch1 (class in minerva.models.nets.tfc) image_size (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) img_size (minerva.models.nets.image.vit.VIT_MLAHead attribute) IMUCNN (class in minerva.models.nets.time_series.imu_transformer) IMUTransformerEncoder (class in minerva.models.nets.time_series.imu_transformer) in_channel (minerva.models.nets.tnc.RnnEncoder attribute) in_channels (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.nets.time_series.resnet.ConvolutionalBlock attribute) (minerva.models.nets.time_series.resnet.ResNetBlock attribute) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) in_chans (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) inc (minerva.models.nets.image.unet._UNet attribute) InceptionModule (class in minerva.models.nets.time_series.inception_time) InceptionTime (class in minerva.models.nets.time_series.inception_time) include_middle (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) index (minerva.transforms.Indexer attribute) (minerva.transforms.transform.Indexer attribute) Indexer (class in minerva.transforms) (class in minerva.transforms.transform)

IndexReader (class in minerva.data.readers.index_reader) indices (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) init_weights() (minerva.models.finetune_adapters.LoRA method) initialize_weights() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) input_dims (minerva.models.nets.tnc.TSEncoder attribute) input_fc (minerva.models.nets.tnc.TSEncoder attribute) input_proj (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) input_shape (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) (minerva.models.nets.time_series.imu_transformer.IMUTransformerEncoder attribute) (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) (minerva.models.nets.time_series.resnet._ResNet1D attribute) input_size (minerva.models.nets.tnc.Discriminator_TNC attribute) input_tensor_shape (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) IntermediateLayerGetter (class in minerva.models.loaders) interpolate_pos_embed() (in module minerva.models.nets.image.vit) (in module minerva.utils.position_embedding) interpolate_pos_embeddings() (minerva.models.nets.image.vit._VisionTransformerBackbone method)

J

jitter() (minerva.transforms.tfc.TFC_Transforms method)

K

kernel_size (minerva.models.adapters.MaxPoolingTransposingSqueezingAdapter attribute) (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute)

key_index (minerva.data.readers.base_file_iterator.BaseFileIterator attribute)

L

label (minerva.data.data_module_tools.SimpleDataset attribute) label_dtype (minerva.data.data_module_tools.RandomDataModule attribute) label_names (minerva.analysis.model_analysis.TSNEAnalysis attribute) label_shape (minerva.data.data_module_tools.RandomDataModule attribute) lambda_param (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) LARS (class in minerva.optimizers) (class in minerva.optimizers.lars) latent_norm (minerva.losses.topological_loss.TopologicalLoss attribute) layers (minerva.models.loaders.IntermediateLayerGetter attribute) (minerva.models.nets.image.vit._Encoder attribute) (minerva.models.ssl.byol.ProjectionHead attribute) LazyPaddedPatchedArrayReader (class in minerva.data.readers) (class in minerva.data.readers.patched_array_reader) LazyPaddedPatchedMDIOReader (class in minerva.data.readers) (class in minerva.data.readers.mdio_reader) LazyPaddedPatchedZarrReader (class in minerva.data.readers) (class in minerva.data.readers.zarr_reader) learning_rate (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) (minerva.models.ssl.cpc.CPC attribute) (minerva.models.ssl.tfc.TFC_Model attribute) (minerva.models.ssl.tnc.TNC attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) legend_title (minerva.analysis.model_analysis.TSNEAnalysis attribute)

len (minerva.data.readers.index_reader.IndexReader attribute) LinearClassifier (class in minerva.models.nets.cpc_networks) ln (minerva.models.nets.image.vit._Encoder attribute) load_backbone() (minerva.models.nets.image.setr._SetR_PUP method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit._VisionTransformerBackbone method) (minerva.models.nets.SETR_PUP method) load_weights() (minerva.models.nets.image.vit._VisionTransformerBackbone method) LoadableModule (class in minerva.models.loaders) log_dir (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) log_loss (minerva.losses.dice.DiceLoss attribute) logger (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) logits (minerva.models.nets.tfc.TFC_PredicionHead attribute) logits_dim (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) logits_simple (minerva.models.nets.tfc.TFC_PredicionHead attribute) LoRA (class in minerva.models.finetune_adapters) loss (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) loss_fn (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.image.vit.VisionTransformer attribute) (minerva.models.nets.SETR_PUP attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.tnc.TNC attribute) lower_part (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) lr (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) lsoftmax (minerva.models.ssl.cpc.CPC attribute)

M

mae_vit_base_patch16 (in module minerva.models.nets.image.vit) mae_vit_base_patch16D4d256 (in module minerva.models.nets.image.vit) mae_vit_huge_patch14 (in module minerva.models.nets.image.vit) mae_vit_large_patch16 (in module minerva.models.nets.image.vit) mae_vit_large_patch16D4d256 (in module minerva.models.nets.image.vit) mae_vit_small_patch16 (in module minerva.models.nets.image.vit) mask_samples_from_same_repr (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) mask_token (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) MaskedAutoencoderViT (class in minerva.models.nets.image.vit) match_edges (minerva.losses.topological_loss.TopologicalSignatureDistance attribute) matrix_A (minerva.models.finetune_adapters.LoRA attribute) matrix_B (minerva.models.finetune_adapters.LoRA attribute) max_pool (minerva.models.nets.tnc.Discriminator_TNC attribute) max_pooling_adapter() (minerva.models.adapters.MaxPoolingTransposingSqueezingAdapter method) maxpool_conv (minerva.models.nets.image.unet._Down attribute) MaxPoolingTransposingSqueezingAdapter (class in minerva.models.adapters) mc_sample_size (minerva.models.ssl.tnc.TNC attribute) mdio_path (minerva.data.readers.LazyPaddedPatchedMDIOReader attribute) (minerva.data.readers.mdio_reader.LazyPaddedPatchedMDIOReader attribute) (minerva.data.readers.mdio_reader.PatchedMDIOReader attribute) (minerva.data.readers.PatchedMDIOReader attribute) mean (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) merge() (minerva.losses.topological_loss.UnionFind method) metrics (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.tfc.TFC_Model attribute) min_batches (minerva.samplers.domain_sampler.RandomDomainSampler attribute) minerva module minerva.analysis module minerva.analysis.complexity_performance_analysis module minerva.analysis.metrics module minerva.analysis.metrics.balanced_accuracy module minerva.analysis.metrics.pixel_accuracy module minerva.analysis.model_analysis module minerva.callback.embedding_logger_callback module minerva.data module minerva.data.data_module_tools module minerva.data.data_modules module minerva.data.data_modules.base module minerva.data.datasets module minerva.data.datasets.base module minerva.data.readers module minerva.data.readers.base_file_iterator module minerva.data.readers.csv_reader module minerva.data.readers.index_reader module minerva.data.readers.mdio_reader module minerva.data.readers.multi_reader module minerva.data.readers.patched_array_reader module minerva.data.readers.png_reader module minerva.data.readers.reader module minerva.data.readers.tabular_reader module minerva.data.readers.tiff_reader module minerva.data.readers.zarr_reader module minerva.engines.engine module minerva.engines.patch_inferencer_engine module minerva.losses module minerva.losses._functional module minerva.losses.batchwise_barlowtwins_loss module minerva.losses.dice module minerva.losses.negative_cossine_similatiry module minerva.losses.ntxent_loss_poly module minerva.losses.topological_loss module minerva.losses.xtent_loss module minerva.models module minerva.models.adapters module minerva.models.finetune_adapters module minerva.models.loaders module minerva.models.nets module minerva.models.nets.base module minerva.models.nets.classic_ml_pipeline module minerva.models.nets.conv_autoencoders_encoders module minerva.models.nets.cpc_networks module minerva.models.nets.dcnn module minerva.models.nets.image.deeplabv3 module minerva.models.nets.image.setr module minerva.models.nets.image.unet module minerva.models.nets.image.vit module minerva.models.nets.image.wisenet module minerva.models.nets.mlp module minerva.models.nets.siamese_network_wrapper module minerva.models.nets.tfc module minerva.models.nets.time_series.cnns module minerva.models.nets.time_series.imu_transformer module minerva.models.nets.time_series.inception_time module minerva.models.nets.time_series.resnet module minerva.models.nets.time_series.ts2vec_classifier module minerva.models.nets.tnc module minerva.models.ssl module minerva.models.ssl.autoencoder module minerva.models.ssl.byol module minerva.models.ssl.cpc module

minerva.models.ssl.simclr module minerva.models.ssl.tfc module minerva.models.ssl.tnc module minerva.models.ssl.topological_autoencoder module minerva.optimizers module minerva.optimizers.lars module minerva.pipelines module minerva.pipelines.base module minerva.pipelines.lightning_pipeline module minerva.samplers module minerva.samplers.domain_sampler module minerva.transforms module minerva.transforms.activity_image module minerva.transforms.random_transform module minerva.transforms.split_transform module minerva.transforms.tfc module minerva.transforms.transform module minerva.utils module minerva.utils.position_embedding module minerva.utils.tensor module minerva.utils.typing module minerva.utils.upsample module MinervaDataModule (class in minerva.data.data_modules) (class in minerva.data.data_modules.base) minimum_steps (minerva.models.ssl.cpc.CPC attribute) mla_channels (minerva.models.nets.image.vit.VIT_MLAHead attribute) MLAHead (class in minerva.models.nets.image.vit) mlahead (minerva.models.nets.image.vit.VIT_MLAHead attribute) mlahead_channels (minerva.models.nets.image.vit.VIT_MLAHead attribute) MLP (class in minerva.models.nets) (class in minerva.models.nets.mlp) mlp_dim (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) mode (minerva.losses.dice.DiceLoss attribute) (minerva.utils.upsample.Upsample attribute) model (minerva.engines.patch_inferencer_engine.PatchInferencer attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) (minerva.models.nets.cpc_networks.HARPredictionHead attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) (minerva.models.nets.tnc.Discriminator_TNC attribute) (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline property) module minerva minerva.analysis minerva.analysis.complexity_performance_analysis minerva.analysis.metrics minerva.analysis.metrics.balanced_accuracy minerva.analysis.metrics.pixel_accuracy minerva.analysis.model_analysis minerva.callback.embedding_logger_callback minerva.data minerva.data.data_module_tools minerva.data.data_modules minerva.data.data_modules.base minerva.data.datasets minerva.data.datasets.base minerva.data.readers minerva.data.readers.base_file_iterator minerva.data.readers.csv_reader minerva.data.readers.index_reader minerva.data.readers.mdio_reader minerva.data.readers.multi_reader minerva.data.readers.patched_array_reader minerva.data.readers.png_reader minerva.data.readers.reader minerva.data.readers.tabular_reader minerva.data.readers.tiff_reader minerva.data.readers.zarr_reader minerva.engines.engine minerva.engines.patch_inferencer_engine minerva.losses minerva.losses._functional minerva.losses.batchwise_barlowtwins_loss minerva.losses.dice minerva.losses.negative_cossine_similatiry minerva.losses.ntxent_loss_poly minerva.losses.topological_loss minerva.losses.xtent_loss minerva.models minerva.models.adapters minerva.models.finetune_adapters minerva.models.loaders minerva.models.nets minerva.models.nets.base minerva.models.nets.classic_ml_pipeline minerva.models.nets.conv_autoencoders_encoders minerva.models.nets.cpc_networks minerva.models.nets.dcnn minerva.models.nets.image.deeplabv3 minerva.models.nets.image.setr minerva.models.nets.image.unet minerva.models.nets.image.vit minerva.models.nets.image.wisenet minerva.models.nets.mlp minerva.models.nets.siamese_network_wrapper minerva.models.nets.tfc minerva.models.nets.time_series.cnns minerva.models.nets.time_series.imu_transformer minerva.models.nets.time_series.inception_time minerva.models.nets.time_series.resnet minerva.models.nets.time_series.ts2vec_classifier minerva.models.nets.tnc minerva.models.ssl minerva.models.ssl.autoencoder minerva.models.ssl.byol minerva.models.ssl.cpc minerva.models.ssl.simclr minerva.models.ssl.tfc minerva.models.ssl.tnc minerva.models.ssl.topological_autoencoder minerva.optimizers minerva.optimizers.lars minerva.pipelines minerva.pipelines.base minerva.pipelines.lightning_pipeline minerva.samplers minerva.samplers.domain_sampler minerva.transforms minerva.transforms.activity_image minerva.transforms.random_transform minerva.transforms.split_transform minerva.transforms.tfc minerva.transforms.transform minerva.utils minerva.utils.position_embedding minerva.utils.tensor minerva.utils.typing minerva.utils.upsample module (minerva.models.nets.tfc.IgnoreWhenBatch1 attribute) ModuleExtractor (class in minerva.models.loaders) MULTICLASS_MODE (in module minerva.losses.dice) MULTILABEL_MODE (in module minerva.losses.dice) MultiReader (class in minerva.data.readers.multi_reader)

N

n_channels (minerva.models.nets.image.unet._UNet attribute) n_components (minerva.analysis.model_analysis.TSNEAnalysis attribute) n_domains_per_sample (minerva.samplers.domain_sampler.RandomDomainSampler attribute) n_repetitions (minerva.transforms.Repeat attribute) (minerva.transforms.transform.Repeat attribute) nb_filters (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) NegativeCosineSimilarity (class in minerva.losses.negative_cossine_similatiry) net (minerva.models.nets.tnc.DilatedConvEncoder attribute) nn (minerva.models.nets.tnc.RnnEncoder attribute) norm (minerva.models.nets.image.setr._SETRUPHead attribute) (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) norm_cfg (minerva.models.nets.image.vit.VIT_MLAHead attribute) norm_layer (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) norm_pix_loss (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) Normalize (class in minerva.transforms) (class in minerva.transforms.transform) normalize (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss attribute) normalize_labels (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) NTXentLoss (class in minerva.losses.xtent_loss) NTXentLoss_poly (class in minerva.losses.ntxent_loss_poly) num_channels_reduced (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) num_classes (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy attribute) (minerva.analysis.metrics.BalancedAccuracy attribute) (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.image.setr._SETRMLAHead attribute) (minerva.models.nets.image.setr._SETRUPHead attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) (minerva.models.nets.image.vit.VIT_MLAHead attribute) (minerva.models.nets.SETR_PUP attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.ssl.tfc.TFC_Model attribute)

num_layers (minerva.models.nets.tnc.RnnEncoder attribute) num_predict_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_residual_blocks (minerva.models.nets.time_series.resnet._ResNet1D attribute) num_samples (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) num_splits (minerva.transforms.split_transform.SplitTransform attribute) num_steps_prediction (minerva.models.ssl.cpc.CPC attribute) num_test_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_train_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_val_samples (minerva.data.data_module_tools.RandomDataModule attribute) NumpyArrayReader (class in minerva.data.readers) (class in minerva.data.readers.patched_array_reader)

O

octaves (minerva.transforms.PerlinMasker attribute) (minerva.transforms.transform.PerlinMasker attribute) off_diagonal() (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss method) on_train_epoch_end() (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) on_train_start() (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback method) one_hot_encoding() (minerva.transforms.tfc.TFC_Transforms method) optimizer_type (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) original_module (minerva.models.finetune_adapters.LoRA attribute) original_resolution (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) out_channels (minerva.models.nets.image.setr._SETRMLAHead attribute) (minerva.models.nets.image.setr._SETRUPHead attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute)

out_tensor_shape (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) outc (minerva.models.nets.image.unet._UNet attribute) output_dims (minerva.models.nets.tnc.TSEncoder attribute) output_filename (minerva.analysis.model_analysis.TSNEAnalysis attribute) output_shape (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) output_simplified_shape (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) output_size (minerva.transforms.Crop attribute) (minerva.transforms.transform.Crop attribute)

P

p (minerva.losses.topological_loss.TopologicalLoss attribute) pad_at (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.nets.time_series.cnns.ZeroPadder2D attribute) pad_kwargs (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) pad_mode (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.transforms.Crop attribute) (minerva.transforms.random_transform.RandomCrop attribute) (minerva.transforms.RandomCrop attribute) (minerva.transforms.transform.Crop attribute) pad_width (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) PadCrop (class in minerva.transforms) (class in minerva.transforms.transform) Padding (class in minerva.transforms) (class in minerva.transforms.transform) padding_mode (minerva.transforms.PadCrop attribute) (minerva.transforms.transform.PadCrop attribute) padding_size (minerva.models.nets.time_series.cnns.ZeroPadder2D attribute) patch_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) patch_inferencer (minerva.engines.patch_inferencer_engine.PatchInferencer attribute) patch_size (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) PatchedArrayReader (class in minerva.data.readers) (class in minerva.data.readers.patched_array_reader) PatchedMDIOReader (class in minerva.data.readers) (class in minerva.data.readers.mdio_reader) PatchedZarrReader (class in minerva.data.readers) (class in minerva.data.readers.zarr_reader) patchify() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) PatchInferencer (class in minerva.engines.patch_inferencer_engine) PatchInferencerEngine (class in minerva.engines.patch_inferencer_engine) path (minerva.analysis.model_analysis._ModelAnalysis property) (minerva.data.readers.LazyPaddedPatchedZarrReader attribute) (minerva.data.readers.PatchedZarrReader attribute) (minerva.data.readers.zarr_reader.LazyPaddedPatchedZarrReader attribute) (minerva.data.readers.zarr_reader.PatchedZarrReader attribute) PathLike (in module minerva.utils.typing) PerlinMasker (class in minerva.transforms) (class in minerva.transforms.transform) permutation (minerva.models.adapters.PermuteAdapter attribute) permute (minerva.models.nets.cpc_networks.ResNetEncoder attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) (minerva.models.nets.tnc.RnnEncoder attribute) (minerva.models.nets.tnc.TSEncoder attribute) PermuteAdapter (class in minerva.models.adapters) PersistentHomologyCalculation (class in minerva.losses.topological_loss) Pipeline (class in minerva.pipelines) (class in minerva.pipelines.base) pipeline (minerva.models.ssl.tfc.TFC_Model attribute) pipeline_id (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) pipeline_info (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property)

PixelAccuracy (class in minerva.analysis.metrics) (class in minerva.analysis.metrics.pixel_accuracy) PNGReader (class in minerva.data.readers) (class in minerva.data.readers.png_reader) pool1 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) pool2 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) pool3 (minerva.models.nets.image.wisenet._WiseNet attribute) pool4 (minerva.models.nets.image.wisenet._WiseNet attribute) pos_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) pos_embedding (minerva.models.nets.image.vit._Encoder attribute) possible_axis (minerva.transforms.random_transform.RandomFlip attribute) (minerva.transforms.RandomFlip attribute) predict_batch() (in module minerva.pipelines.lightning_pipeline) predict_data (minerva.data.data_module_tools.RandomDataModule attribute) predict_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.MinervaDataModule method) predict_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) predict_proba (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) predict_step() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.SFM_BasePatch16_Downstream method) (minerva.models.nets.image.wisenet.WiseNet method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.nets.WiseNet method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.tfc.TFC_Model method) prediction_head (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) PredictionNetwork (class in minerva.models.nets.cpc_networks) predictors (minerva.models.ssl.cpc.CPC attribute) preprocess (minerva.data.readers.multi_reader.MultiReader attribute) preprocess_step() (minerva.models.ssl.byol.BYOLProjectionHead method) (minerva.models.ssl.byol.ProjectionHead method) prob (minerva.transforms.random_transform.RandomGrayScale attribute) (minerva.transforms.random_transform.RandomRotation attribute) (minerva.transforms.random_transform.RandomSolarize attribute) (minerva.transforms.RandomGrayScale attribute) (minerva.transforms.RandomRotation attribute) (minerva.transforms.RandomSolarize attribute) projection_head (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) (minerva.models.ssl.tnc.TNC attribute) projection_head_momentum (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) ProjectionHead (class in minerva.models.ssl.byol) projector (minerva.models.nets.tfc.TFC_Standard_Projector attribute) (minerva.models.nets.tnc.ConvBlock attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute)

R

random_masking() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) RandomCrop (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomDataModule (class in minerva.data.data_module_tools) RandomDomainSampler (class in minerva.samplers.domain_sampler) RandomFlip (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomGrayScale (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomRotation (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomSolarize (class in minerva.transforms) (class in minerva.transforms.random_transform) readers (minerva.data.datasets.base.SimpleDataset attribute) (minerva.data.datasets.SimpleDataset attribute) receptive_field (minerva.models.nets.tnc.SamePadConv attribute) reconstruction_loss (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) reduction_ratio (minerva.models.nets.time_series.resnet._ResNet1D attribute) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) relu (minerva.models.nets.cpc_networks.ConvBlock attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) remove (minerva.models.nets.tnc.SamePadConv attribute) remove_frequency() (minerva.transforms.tfc.TFC_Transforms method) Repeat (class in minerva.transforms) (class in minerva.transforms.transform) repr_dropout (minerva.models.nets.tnc.TSEncoder attribute) resample_signals() (minerva.transforms.activity_image.ActivityImageTransforms method) residual_blocks (minerva.models.nets.time_series.resnet._ResNet1D attribute) resize() (in module minerva.utils.upsample) ResNet1D_5 (class in minerva.models.nets.time_series.resnet) ResNet1D_8 (class in minerva.models.nets.time_series.resnet)

ResNet1DBase (class in minerva.models.nets.time_series.resnet) ResNetBlock (class in minerva.models.nets.time_series.resnet) ResNetEncoder (class in minerva.models.nets.cpc_networks) (class in minerva.models.nets.tnc) ResNetSE1D_5 (class in minerva.models.nets.time_series.resnet) ResNetSE1D_8 (class in minerva.models.nets.time_series.resnet) ResNetSEBlock (class in minerva.models.nets.time_series.resnet) result (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) return_single (minerva.data.datasets.base.SimpleDataset attribute) (minerva.data.datasets.SimpleDataset attribute) return_tuple (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) reverse (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) RN50model (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone attribute) rng (minerva.samplers.domain_sampler.RandomDomainSampler attribute) (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.PadCrop attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) (minerva.transforms.transform.PadCrop attribute) rnn (minerva.models.nets.cpc_networks.HARCPCAutoregressive attribute) (minerva.models.nets.tnc.RnnEncoder attribute) RnnEncoder (class in minerva.models.nets.tnc) root_dir (minerva.data.readers.png_reader.PNGReader attribute) (minerva.data.readers.PNGReader attribute) (minerva.data.readers.tiff_reader.TiffReader attribute) (minerva.data.readers.TiffReader attribute) roots() (minerva.losses.topological_loss.UnionFind method) Rotation (class in minerva.transforms) (class in minerva.transforms.transform) run() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) run_status (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property)

S

SamePadConv (class in minerva.models.nets.tnc) saturation (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) scale (minerva.transforms.PerlinMasker attribute) (minerva.transforms.transform.PerlinMasker attribute) scaling (minerva.models.finetune_adapters.LoRA attribute) schedule_length (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) seed (minerva.analysis.model_analysis.TSNEAnalysis attribute) (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) (minerva.samplers.domain_sampler.RandomDomainSampler attribute) (minerva.transforms.PadCrop attribute) (minerva.transforms.transform.PadCrop attribute) segmentation_head (minerva.models.nets.image.vit.VisionTransformer attribute) SegmentationHead (class in minerva.models.nets.image.vit) select_transform() (minerva.transforms._RandomSyncedTransform method) (minerva.transforms.random_transform._RandomSyncedTransform method) (minerva.transforms.random_transform.RandomCrop method) (minerva.transforms.random_transform.RandomFlip method) (minerva.transforms.random_transform.RandomGrayScale method) (minerva.transforms.random_transform.RandomRotation method) (minerva.transforms.random_transform.RandomSolarize method) (minerva.transforms.RandomCrop method) (minerva.transforms.RandomFlip method) (minerva.transforms.RandomGrayScale method) (minerva.transforms.RandomRotation method) (minerva.transforms.RandomSolarize method) seq_length (minerva.models.nets.image.vit._VisionTransformerBackbone attribute) SETR_PUP (class in minerva.models.nets) (class in minerva.models.nets.image.setr) setup() (minerva.data.data_module_tools.RandomDataModule method) SFM_BasePatch16_Downstream (class in minerva.models.nets.image.vit) shape (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) shared_part (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) ShortcutLayer (class in minerva.models.nets.time_series.inception_time) shuffle (minerva.samplers.domain_sampler.RandomDomainSampler attribute)

SiameseNetworkWrapper (class in minerva.models.nets.siamese_network_wrapper) sig_error() (minerva.losses.topological_loss.TopologicalSignatureDistance static method) signal_samples (minerva.transforms.activity_image.ActivityImageTransforms attribute) signal_sequences (minerva.transforms.activity_image.ActivityImageTransforms attribute) signature_calculator (minerva.losses.topological_loss.TopologicalSignatureDistance attribute) SimCLR (class in minerva.models.ssl) (class in minerva.models.ssl.simclr) similarity_function (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) SimpleDataset (class in minerva.data.data_module_tools) (class in minerva.data.datasets) (class in minerva.data.datasets.base) SimpleLightningPipeline (class in minerva.pipelines.lightning_pipeline) SimpleSupervisedModel (class in minerva.models.nets) (class in minerva.models.nets.base) size (minerva.utils.upsample.Upsample attribute) sklearn_model_save_path (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) SklearnPipeline (class in minerva.models.nets.classic_ml_pipeline) smooth (minerva.losses.dice.DiceLoss attribute) softmax (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.models.ssl.cpc.CPC attribute) Solarize (class in minerva.transforms) (class in minerva.transforms.transform) sort_method (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) sort_selected (minerva.losses.topological_loss.AlephPersistenHomologyCalculation attribute) split_dimension (minerva.transforms.split_transform.SplitTransform attribute) SplitTransform (class in minerva.transforms.split_transform) Squeeze (class in minerva.transforms) (class in minerva.transforms.transform) squeeze (minerva.models.nets.tnc.RnnEncoder attribute) SqueezeAndExcitation1D (class in minerva.models.nets.time_series.resnet) std (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) step() (minerva.optimizers.LARS method) (minerva.optimizers.lars.LARS method) stride (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) system_info (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property)

T

TabularReader (class in minerva.data.readers.tabular_reader) target_channels (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) target_h_size (minerva.transforms.PadCrop attribute) (minerva.transforms.Padding attribute) (minerva.transforms.transform.PadCrop attribute) (minerva.transforms.transform.Padding attribute) target_time_steps (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) target_w_size (minerva.transforms.PadCrop attribute) (minerva.transforms.Padding attribute) (minerva.transforms.transform.PadCrop attribute) (minerva.transforms.transform.Padding attribute) task (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy attribute) (minerva.analysis.metrics.BalancedAccuracy attribute) temperature (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.losses.xtent_loss.NTXentLoss attribute) tensor1 (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) test_data (minerva.data.data_module_tools.RandomDataModule attribute) test_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.MinervaDataModule method) test_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) test_engine (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) test_metrics (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) test_step() (minerva.engines.patch_inferencer_engine.PatchInferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.tfc.TFC_Model method) text_size (minerva.analysis.model_analysis.TSNEAnalysis attribute) TFC_Backbone (class in minerva.models.nets.tfc) TFC_Conv_Block (class in minerva.models.nets.tfc) TFC_Model (class in minerva.models.ssl.tfc) TFC_PredicionHead (class in minerva.models.nets.tfc) TFC_Standard_Projector (class in minerva.models.nets.tfc) TFC_Transforms (class in minerva.transforms.tfc) threshold (minerva.models.nets.image.setr._SETRMLAHead attribute) (minerva.transforms.random_transform.RandomSolarize attribute) (minerva.transforms.RandomSolarize attribute) (minerva.transforms.Solarize attribute) (minerva.transforms.transform.Solarize attribute) TiffReader (class in minerva.data.readers) (class in minerva.data.readers.tiff_reader) time_encoder (minerva.models.nets.tfc.TFC_Backbone attribute) time_projector (minerva.models.nets.tfc.TFC_Backbone attribute) time_steps (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) title (minerva.analysis.model_analysis.TSNEAnalysis attribute) TNC (class in minerva.models.ssl.tnc) to_rgb (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute)

to_tensor() (in module minerva.utils.tensor) topological_loss (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) topological_signature_distance (minerva.losses.topological_loss.TopologicalLoss attribute) TopologicalAutoencoder (class in minerva.models.ssl.topological_autoencoder) TopologicalLoss (class in minerva.losses.topological_loss) TopologicalSignatureDistance (class in minerva.losses.topological_loss) train_data (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) train_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.MinervaDataModule method) train_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) train_y (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) trainer (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline property) training_step() (minerva.engines.patch_inferencer_engine.PatchInferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) transform (minerva.models.nets.tfc.TFC_Backbone attribute) (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.ContrastiveTransform attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) (minerva.transforms.transform.ContrastiveTransform attribute) transformations_executed (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) transformer_dim (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) transformer_encoder (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) TransformPipeline (class in minerva.transforms) (class in minerva.transforms.transform) transforms (minerva.data.datasets.base.SimpleDataset attribute) (minerva.data.datasets.SimpleDataset attribute) (minerva.transforms.transform.TransformPipeline attribute) (minerva.transforms.TransformPipeline attribute) Transpose (class in minerva.transforms) (class in minerva.transforms.transform) TransShape() (minerva.models.nets.image.vit.DecoderCup method) TS2VecClassifier (class in minerva.models.nets.time_series.ts2vec_classifier) TSEncoder (class in minerva.models.nets.tnc) TSNEAnalysis (class in minerva.analysis.model_analysis)

U

UNet (class in minerva.models.nets) (class in minerva.models.nets.image.unet) unfreeze_weights() (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone method) UnionFind (class in minerva.losses.topological_loss) unpatchify() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) Unsqueeze (class in minerva.transforms) (class in minerva.transforms.transform) up (minerva.models.nets.image.vit.DecoderBlock attribute) up1 (minerva.models.nets.image.unet._UNet attribute) up2 (minerva.models.nets.image.unet._UNet attribute) (minerva.models.nets.image.vit.DecoderCup attribute) up3 (minerva.models.nets.image.unet._UNet attribute) (minerva.models.nets.image.vit.DecoderCup attribute) up4 (minerva.models.nets.image.unet._UNet attribute) (minerva.models.nets.image.vit.DecoderCup attribute)

up_convs (minerva.models.nets.image.setr._SETRMLAHead attribute) (minerva.models.nets.image.setr._SETRUPHead attribute) update() (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy method) (minerva.analysis.metrics.BalancedAccuracy method) (minerva.analysis.metrics.pixel_accuracy.PixelAccuracy method) (minerva.analysis.metrics.PixelAccuracy method) update_momentum() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) upper_part (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) Upsample (class in minerva.utils.upsample) use_bottleneck (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) use_cycles (minerva.losses.topological_loss.TopologicalSignatureDistance attribute) use_only_train_data (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) use_residual (minerva.models.nets.time_series.inception_time._InceptionTime attribute)

V

val_data (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) val_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.MinervaDataModule method) val_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) val_y (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) validation_step() (minerva.engines.patch_inferencer_engine.PatchInferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method)

VisionTransformer (class in minerva.models.nets.image.vit) vit_base_patch16_downstream_regression() (in module minerva.models.nets.image.vit) vit_huge_patch14_downstream_regression() (in module minerva.models.nets.image.vit) vit_large_patch16_downstream_regression() (in module minerva.models.nets.image.vit) VIT_MLAHead (class in minerva.models.nets.image.vit)

W

w (minerva.models.ssl.tnc.TNC attribute) weight_function (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) width (minerva.analysis.model_analysis.TSNEAnalysis attribute)

WiseNet (class in minerva.models.nets) (class in minerva.models.nets.image.wisenet) Wk (minerva.models.nets.cpc_networks.PredictionNetwork attribute)

X

x_axis_title (minerva.analysis.model_analysis.TSNEAnalysis attribute)

Y

y_axis_title (minerva.analysis.model_analysis.TSNEAnalysis attribute)

Z

ZeroPadder2D (class in minerva.models.nets.time_series.cnns)