Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __add__() (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.TransformPipeline method) __call__() (minerva.data.data_modules.datamodule_descriptor.DataModuleDescriptor method) (minerva.engines.engine._Engine method) (minerva.engines.engine._Inferencer method) (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine method) (minerva.losses.topological_loss.AlephPersistenHomologyCalculation method) (minerva.losses.topological_loss.PersistentHomologyCalculation method) (minerva.models.adapters.MaxPoolingTransposingSqueezingAdapter method) (minerva.models.adapters.PermuteAdapter method) (minerva.models.loaders.FromModel method) (minerva.models.loaders.FromPretrained method) (minerva.models.loaders.IntermediateLayerGetter method) (minerva.models.loaders.ModuleExtractor method) (minerva.transforms._RandomSyncedTransform method) (minerva.transforms._Transform method) (minerva.transforms.activity_image.ActivityImageTransforms method) (minerva.transforms.CastTo method) (minerva.transforms.ColorJitter method) (minerva.transforms.context_transform._ContextTransform method) (minerva.transforms.context_transform.ClassRatioCrop method) (minerva.transforms.context_transform.ContextTransformPipeline method) (minerva.transforms.context_transform.DataOnlyTransform method) (minerva.transforms.ContrastiveTransform method) (minerva.transforms.Crop method) (minerva.transforms.Flip method) (minerva.transforms.Gradient method) (minerva.transforms.GrayScale method) (minerva.transforms.Identity method) (minerva.transforms.Indexer method) (minerva.transforms.moco_augmentations.MoCoRandomAugmentations method) (minerva.transforms.Normalize method) (minerva.transforms.PadCrop method) (minerva.transforms.Padding method) (minerva.transforms.PerlinMasker method) (minerva.transforms.random_transform._RandomSyncedTransform method) (minerva.transforms.Repeat method) (minerva.transforms.Rotation method) (minerva.transforms.Solarize method) (minerva.transforms.split_transform.SplitTransform method) (minerva.transforms.Squeeze method) (minerva.transforms.tfc.TFC_Transforms method) (minerva.transforms.transform._Transform method) (minerva.transforms.transform.CastTo method) (minerva.transforms.transform.ColorJitter method) (minerva.transforms.transform.ContrastiveTransform method) (minerva.transforms.transform.Crop method) (minerva.transforms.transform.Flip method) (minerva.transforms.transform.Gradient method) (minerva.transforms.transform.GrayScale method) (minerva.transforms.transform.Identity method) (minerva.transforms.transform.Indexer method) (minerva.transforms.transform.Normalize method) (minerva.transforms.transform.PadCrop method) (minerva.transforms.transform.Padding method) (minerva.transforms.transform.PerlinMasker method) (minerva.transforms.transform.Repeat method) (minerva.transforms.transform.Reshape method) (minerva.transforms.transform.Resize method) (minerva.transforms.transform.Rotation method) (minerva.transforms.transform.Solarize method) (minerva.transforms.transform.Squeeze method) (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.transform.Transpose method) (minerva.transforms.transform.Unsqueeze method) (minerva.transforms.TransformPipeline method) (minerva.transforms.Transpose method) (minerva.transforms.Unsqueeze method) __getattr__() (minerva.models.loaders.FromModel method) (minerva.models.loaders.FromPretrained method) __getitem__() (minerva.data.data_module_tools.SimpleDataset method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.context_dataset.ContextDataset method) (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC method) (minerva.data.datasets.har_xu_23.HarDataset method) (minerva.data.datasets.har_xu_23.TNCDataset method) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset method) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers._Reader method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.data.readers.index_reader.IndexReader method) (minerva.data.readers.IndexReader method) (minerva.data.readers.LazyPaddedPatchedArrayReader method) (minerva.data.readers.multi_reader.MultiReader method) (minerva.data.readers.numpy_reader.NumpyFolderReader method) (minerva.data.readers.NumpyFolderReader method) (minerva.data.readers.patched_array_reader.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) (minerva.data.readers.png_reader.PNGReader method) (minerva.data.readers.PNGReader method) (minerva.data.readers.reader._Reader method) (minerva.data.readers.tabular_reader.TabularReader method) (minerva.data.readers.TabularReader method) (minerva.data.readers.text_reader.TextReader method) (minerva.data.readers.TextReader method) (minerva.data.readers.tiff_reader.TiffReader method) (minerva.data.readers.TiffReader method) __iter__() (minerva.samplers.domain_sampler.RandomDomainSampler method) __len__() (minerva.data.data_module_tools.SimpleDataset method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.context_dataset.ContextDataset method) (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC method) (minerva.data.datasets.har_xu_23.HarDataset method) (minerva.data.datasets.har_xu_23.TNCDataset method) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset method) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers._Reader method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.data.readers.index_reader.IndexReader method) (minerva.data.readers.IndexReader method) (minerva.data.readers.multi_reader.MultiReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) (minerva.data.readers.reader._Reader method) (minerva.data.readers.tabular_reader.TabularReader method) (minerva.data.readers.TabularReader method) (minerva.samplers.domain_sampler.RandomDomainSampler method) __radd__() (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.TransformPipeline method) __reduce_ex__() (minerva.models.loaders.FromPretrained method) __repr__() (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC method) (minerva.data.data_modules.MinervaDataModule method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset method) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.models.loaders.FromPretrained method) (minerva.models.nets.time_series.cnns.ZeroPadder2D method) __str__() (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.data.data_modules.MinervaDataModule method) (minerva.data.datasets.base.ConcatDataset method) (minerva.data.datasets.base.FractionalRandomSubset method) (minerva.data.datasets.base.FractionalSubset method) (minerva.data.datasets.base.SimpleDataset method) (minerva.data.datasets.base.Subset method) (minerva.data.datasets.binary_tree_subset.BinaryTreeSubset method) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset method) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) (minerva.data.datasets.SimpleDataset method) (minerva.data.readers.base_file_iterator.BaseFileIterator method) (minerva.data.readers.numpy_reader.NumpyFolderReader method) (minerva.data.readers.NumpyFolderReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) (minerva.data.readers.png_reader.PNGReader method) (minerva.data.readers.PNGReader method) (minerva.data.readers.tabular_reader.TabularReader method) (minerva.data.readers.TabularReader method) (minerva.data.readers.text_reader.TextReader method) (minerva.data.readers.TextReader method) (minerva.data.readers.tiff_reader.TiffReader method) (minerva.data.readers.TiffReader method) (minerva.models.loaders.FromPretrained method) (minerva.models.nets.time_series.cnns.ZeroPadder2D method) (minerva.pipelines.experiment.Experiment method) (minerva.pipelines.experiment.ModelConfig method) (minerva.transforms.CastTo method) (minerva.transforms.ColorJitter method) (minerva.transforms.ContrastiveTransform method) (minerva.transforms.Crop method) (minerva.transforms.Flip method) (minerva.transforms.Gradient method) (minerva.transforms.GrayScale method) (minerva.transforms.Identity method) (minerva.transforms.Indexer method) (minerva.transforms.Normalize method) (minerva.transforms.PadCrop method) (minerva.transforms.Padding method) (minerva.transforms.PerlinMasker method) (minerva.transforms.random_transform.RandomCrop method) (minerva.transforms.random_transform.RandomFlip method) (minerva.transforms.random_transform.RandomGrayScale method) (minerva.transforms.random_transform.RandomResize method) (minerva.transforms.random_transform.RandomRotation method) (minerva.transforms.random_transform.RandomSolarize method) (minerva.transforms.RandomCrop method) (minerva.transforms.RandomFlip method) (minerva.transforms.RandomGrayScale method) (minerva.transforms.RandomRotation method) (minerva.transforms.RandomSolarize method) (minerva.transforms.Repeat method) (minerva.transforms.Rotation method) (minerva.transforms.Solarize method) (minerva.transforms.Squeeze method) (minerva.transforms.transform.CastTo method) (minerva.transforms.transform.ColorJitter method) (minerva.transforms.transform.ContrastiveTransform method) (minerva.transforms.transform.Crop method) (minerva.transforms.transform.Flip method) (minerva.transforms.transform.Gradient method) (minerva.transforms.transform.GrayScale method) (minerva.transforms.transform.Identity method) (minerva.transforms.transform.Indexer method) (minerva.transforms.transform.Normalize method) (minerva.transforms.transform.PadCrop method) (minerva.transforms.transform.Padding method) (minerva.transforms.transform.PerlinMasker method) (minerva.transforms.transform.Repeat method) (minerva.transforms.transform.Reshape method) (minerva.transforms.transform.Rotation method) (minerva.transforms.transform.Solarize method) (minerva.transforms.transform.Squeeze method) (minerva.transforms.transform.TransformPipeline method) (minerva.transforms.transform.Transpose method) (minerva.transforms.transform.Unsqueeze method) (minerva.transforms.TransformPipeline method) (minerva.transforms.Transpose method) (minerva.transforms.Unsqueeze method) __typing_string() (minerva.pipelines.experiment.Experiment static method) __update_dataloader_kwargs() (minerva.data.data_modules.base.MinervaDataModule static method) (minerva.data.data_modules.MinervaDataModule static method) __version__ (in module minerva) __wrapped__ (minerva.models.loaders.FromModel attribute) (minerva.models.loaders.FromPretrained attribute) _adjust_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _apply_metrics_per_sample (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _batch_size (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _cache (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) _cache_result (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _cached_run_status (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _calculate_fc_input_features() (minerva.models.nets.tfc.TFC_Backbone method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D method) (minerva.models.nets.time_series.cnns.CNN_PF_2D method) (minerva.models.nets.time_series.imu_transformer.IMUCNN method) (minerva.models.nets.time_series.inception_time.InceptionTime method) (minerva.models.nets.time_series.resnet.ResNet1DBase method) (minerva.models.nets.time_series.ts2vec_classifier.TS2VecClassifier method) _calculate_metrics() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _checkpoint_dir (minerva.pipelines.experiment.Experiment attribute) _classification_metrics (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _combine_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine method) _compute_base_padding() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine method) _compute_distance_matrix() (minerva.losses.topological_loss.TopologicalLoss static method) _compute_metrics() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.tfc.TFC_Model method) _compute_output_shape() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine method) _ContextTransform (class in minerva.transforms.context_transform) _cosine_simililarity() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) _count_matching_pairs() (minerva.losses.topological_loss.TopologicalSignatureDistance static method) _create_backbone() (minerva.models.nets.time_series.imu_transformer.IMUCNN method) (minerva.models.nets.time_series.imu_transformer.IMUTransformerEncoder method) _create_fc() (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D method) (minerva.models.nets.time_series.cnns.CNN_PF_2D method) (minerva.models.nets.time_series.imu_transformer.IMUCNN method) (minerva.models.nets.time_series.imu_transformer.IMUTransformerEncoder method) (minerva.models.nets.time_series.inception_time.InceptionTime method) _custom_input_size (minerva.analysis.complexity_performance_analysis.ComplexityPerformanceAnalysis attribute) _data (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _dataloader_cls (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _default_prediction_head() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) _default_projection_head() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) _dice_loss() (minerva.losses.dice.MultiClassDiceCELoss method) _disable_fix_length() (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) _dot_simililarity() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly static method) _DoubleConv (class in minerva.models.nets.image.unet) _Down (class in minerva.models.nets.image.unet) _Engine (class in minerva.engines.engine) _eval_step_with_slide() (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) _evaluate() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _evaluate_model() (minerva.pipelines.experiment.Experiment method) _extract_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine method) _files (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) _filter_files() (minerva.data.readers.base_file_iterator.BaseFileIterator method) _find_neighours() (minerva.data.datasets.har_xu_23.TNCDataset method) _find_non_neighours() (minerva.data.datasets.har_xu_23.TNCDataset method) _fit() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _forward() (minerva.models.nets.image.vit_local.vit.ParallelThingsBlock method) _forward_jit() (minerva.models.nets.image.vit_local.vit.ParallelThingsBlock method) _freeze() (minerva.models.nets.cpc_networks.LinearClassifier method) _generate_data() (minerva.data.data_module_tools.RandomDataModule method) _generate_seed() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) _get_correlated_mask() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) _get_loader() (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) _get_longest_sample_size() (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) _get_nonzero_cycles() (minerva.losses.topological_loss.TopologicalSignatureDistance static method) _get_pairings() (minerva.losses.topological_loss.TopologicalSignatureDistance method) _get_patches() (minerva.data.readers.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) _get_similarity_function() (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) _get_sort_values() (minerva.data.readers.base_file_iterator.BaseFileIterator method) _IMUTransformerEncoder (class in minerva.models.nets.time_series.imu_transformer) _InceptionTime (class in minerva.models.nets.time_series.inception_time) _Inferencer (class in minerva.engines.engine) _init_img_size() (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed method) (minerva.models.nets.image.vit_local.PatchEmbed method) _init_weights() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.image.vit_local.VisionTransformer method) (minerva.models.nets.image.vit_local.vit.VisionTransformer method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) _initialize_vars() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) _instantiate_cls() (in module minerva.utils.instantiators) _load_class() (minerva.models.nets.classic_ml_pipeline.SklearnPipeline static method) _load_data() (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset method) _load_dataset() (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) _longest_sample_size (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) _loss_from_targets() (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) _loss_func() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.DeepLabV3 method) (minerva.models.nets.image.deeplabv3.DeepLabV3 method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) _model (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _model_analysis (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _ModelAnalysis (class in minerva.analysis.model_analysis) _name (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _normalize() (in module minerva.losses.batchwise_barlowtwins_loss) _num_workers (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _off_diagonal() (in module minerva.losses.batchwise_barlowtwins_loss) _OutConv (class in minerva.models.nets.image.unet) _pad_data() (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) (minerva.data.readers.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.LazyPaddedPatchedArrayReader method) (minerva.data.readers.patched_array_reader.PatchedArrayReader method) (minerva.data.readers.PatchedArrayReader method) _parent (minerva.losses.topological_loss.UnionFind attribute) _path (minerva.analysis.complexity_performance_analysis.ComplexityPerformanceAnalysis attribute) (minerva.analysis.model_analysis._ModelAnalysis attribute) _pipeline_id (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _plot_tsne_written_dirs (in module minerva.analysis.model_analysis) _pos_embed() (minerva.models.nets.image.vit_local.VisionTransformer method) (minerva.models.nets.image.vit_local.vit.VisionTransformer method) _pos_embeding() (minerva.models.nets.image.vit.SetrVitBackbone method) _predict() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _predict_split (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _predictions_dir (minerva.pipelines.experiment.Experiment attribute) _print_evaluation_summary() (minerva.pipelines.experiment.Experiment method) _print_train_summary() (minerva.pipelines.experiment.Experiment method) _RandomSyncedTransform (class in minerva.transforms) (class in minerva.transforms.random_transform) _read_all_csv() (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) _read_csv() (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) _Reader (class in minerva.data.readers) (class in minerva.data.readers.reader) _readers (minerva.data.readers.multi_reader.MultiReader attribute) _reconstruct_patches() (minerva.engines.patch_inferencer_engine.PatchInferencerEngine method) _regression_metrics (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _ResNet1D (class in minerva.models.nets.time_series.resnet) _results_dir (minerva.pipelines.experiment.Experiment attribute) _run() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.experiment.Experiment method) (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) (minerva.pipelines.Pipeline method) _run_id (minerva.pipelines.experiment.Experiment attribute) _safe_upsample() (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 method) _sample_dataset() (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) _save_pipeline_info() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) _save_run_status (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.Pipeline attribute) _scan_data() (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset method) _select_distances_from_pairs() (minerva.losses.topological_loss.TopologicalSignatureDistance method) _select_samples() (minerva.samplers.domain_sampler.RandomDomainSampler method) _select_targets() (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) _set_trainable_params() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.SimpleSupervisedModel method) _SetR_PUP (class in minerva.models.nets.image.setr) _SETRUPHead (class in minerva.models.nets.image.setr) _shuffle_train (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _single_step() (minerva.engines.engine._Inferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.image.vit.SFM_BasePatch16_Downstream method) (minerva.models.nets.image.wisenet.WiseNet method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.nets.WiseNet method) (minerva.models.ssl.barlowtwins.BarlowTwins method) (minerva.models.ssl.fastsiam.FastSiam method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.simsiam.SimSiam method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) _slide_inference() (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.SETR_PUP method) _sort_files() (minerva.data.readers.base_file_iterator.BaseFileIterator method) _stderr_path (minerva.pipelines.experiment.Experiment attribute) _stdout_path (minerva.pipelines.experiment.Experiment attribute) _test() (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline method) _test_dataloader_kwargs (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _test_dataset (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _train_dataloader_kwargs (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _train_dataset (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _train_model() (minerva.pipelines.experiment.Experiment method) _trainer (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline attribute) _trainer_parameters() (minerva.pipelines.experiment.Experiment method) _training_metrics_path (minerva.pipelines.experiment.Experiment attribute) _Transform (class in minerva.transforms) (class in minerva.transforms.transform) _UNet (class in minerva.models.nets.image.unet) _Up (class in minerva.models.nets.image.unet) _val_dataloader_kwargs (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _val_dataset (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) _WiseNet (class in minerva.models.nets.image.wisenet) A accelerator (minerva.pipelines.experiment.Experiment attribute) activate (minerva.models.nets.image.setr.ConvModule attribute) (minerva.models.nets.image.vit.MMFFN attribute) activation_cls (minerva.models.nets.time_series.resnet.ConvolutionalBlock attribute) (minerva.models.nets.time_series.resnet.ResNetBlock attribute) active (minerva.models.nets.tfc.IgnoreWhenBatch1 attribute) ActivityImageTransforms (class in minerva.transforms.activity_image) adapt_padding (minerva.models.nets.image.vit.MMPatchEmbed attribute) AdaptedHead (class in minerva.models.nets.diet_linear) adapter (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.diet_linear.AdaptedHead attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.nets.tfc.TFC_Backbone attribute) (minerva.models.ssl.diet.DIET attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) add_frequency() (minerva.transforms.tfc.TFC_Transforms method) additional_describes (minerva.data.data_modules.base.MinervaDataModule attribute) (minerva.data.data_modules.MinervaDataModule attribute) adf (minerva.data.data_modules.har_xu_23.HarDataModule attribute) (minerva.data.datasets.har_xu_23.TNCDataset attribute) adjusted (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy attribute) (minerva.analysis.metrics.BalancedAccuracy attribute) aggregate_loss() (minerva.losses.dice.DiceLoss method) AlephPersistenHomologyCalculation (class in minerva.losses.topological_loss) align_corners (minerva.models.nets.image.setr._SETRUPHead attribute) (minerva.utils.upsample.Upsample attribute) allow_pickle (minerva.data.readers.numpy_reader.NumpyFolderReader attribute) (minerva.data.readers.NumpyFolderReader attribute) annotate (minerva.data.datasets.har_xu_23.HarDataset attribute) argmax_output (minerva.models.nets.tfc.TFC_PredicionHead attribute) array_key (minerva.data.readers.numpy_reader.NumpyFolderReader attribute) (minerva.data.readers.NumpyFolderReader attribute) Attention (class in minerva.models.nets.image.vit_local.vit) attn (minerva.models.nets.image.vit.MMMultiheadAttention attribute) (minerva.models.nets.image.vit.MMTransformerEncoderLayer attribute) (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) attn_drop (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) attn_out_proj (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) attns (minerva.models.nets.image.vit_local.vit.ParallelThingsBlock attribute) augment (minerva.transforms.moco_augmentations.MoCoRandomAugmentations attribute) Autoencoder (class in minerva.models.ssl.autoencoder) aux_head1 (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) aux_head2 (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) aux_head3 (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) aux_weights (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) avg_pooling (minerva.models.nets.time_series.resnet._ResNet1D attribute) axes (minerva.transforms.transform.Transpose attribute) (minerva.transforms.Transpose attribute) axis (minerva.transforms.Flip attribute) (minerva.transforms.Repeat attribute) (minerva.transforms.Squeeze attribute) (minerva.transforms.transform.Flip attribute) (minerva.transforms.transform.Repeat attribute) (minerva.transforms.transform.Squeeze attribute) (minerva.transforms.transform.Unsqueeze attribute) (minerva.transforms.Unsqueeze attribute) B backbone (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) (minerva.models.nets.siamese_network_wrapper.SiameseNetworkWrapper attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D_Backbone attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D_Backbone attribute) (minerva.models.ssl.barlowtwins.BarlowTwins attribute) (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) (minerva.models.ssl.diet.DIET attribute) (minerva.models.ssl.fastsiam.FastSiam attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) (minerva.models.ssl.simsiam.SimSiam attribute) (minerva.models.ssl.tnc.TNC attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) backbone_momentum (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) backbone_name (minerva.pipelines.experiment.ModelInformation attribute) backbone_names_list (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) backbone_training_steps_counter (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) BalancedAccuracy (class in minerva.analysis.metrics) (class in minerva.analysis.metrics.balanced_accuracy) BarlowTwins (class in minerva.models.ssl.barlowtwins) BarlowTwinsLoss (class in minerva.losses.batchwise_barlowtwins_loss) BaseFileIterator (class in minerva.data.readers.base_file_iterator) batch_first (minerva.models.nets.image.vit.MMMultiheadAttention attribute) batch_norm (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) batch_size (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.data_modules.har_xu_23.HarDataModule attribute) (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.models.ssl.cpc.CPC attribute) (minerva.samplers.domain_sampler.RandomDomainSampler attribute) BatchNorm (minerva.models.nets.image.vit.VIT_MLAHead attribute) BatchWiseBarlowTwinLoss (class in minerva.losses.batchwise_barlowtwins_loss) bbox (minerva.transforms.Crop attribute) (minerva.transforms.transform.Crop attribute) bidirectional (minerva.models.nets.tnc.RnnEncoder attribute) bilinear (minerva.models.nets.image.unet._UNet attribute) BINARY_MODE (in module minerva.losses.dice) BinaryTreeSubset (class in minerva.data.datasets.binary_tree_subset) BinaryWeightedDiceLoss (class in minerva.losses.weighted_dice_loss) Block (class in minerva.models.nets.image.vit_local) (class in minerva.models.nets.image.vit_local.vit) block (minerva.models.nets.tfc.TFC_Conv_Block attribute) (minerva.models.nets.time_series.resnet.ConvolutionalBlock attribute) (minerva.models.nets.time_series.resnet.ResNetBlock attribute) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) blocks (minerva.models.nets.image.vit.DecoderCup attribute) (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) bn (minerva.models.nets.image.setr.ConvModule attribute) bn1 (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) bottleneck_size (minerva.models.nets.time_series.inception_time.InceptionModule attribute) brightness (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) bt_loss_bs() (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss method) build_indices() (in module minerva.data.datasets.binary_tree_subset) build_model() (minerva.models.nets.time_series.inception_time._InceptionTime method) (minerva.models.nets.time_series.inception_time.InceptionModule method) BYOL (class in minerva.models.ssl) (class in minerva.models.ssl.byol) C cached (minerva.samplers.domain_sampler.RandomDomainSampler attribute) calculate_metrics() (minerva.models.nets.cpc_networks.LinearClassifier method) callbacks (minerva.pipelines.experiment.Experiment attribute) cast_to (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) (minerva.data.readers.tabular_reader.TabularReader attribute) (minerva.data.readers.TabularReader attribute) CastTo (class in minerva.transforms) (class in minerva.transforms.transform) cell_type (minerva.models.nets.tnc.RnnEncoder attribute) checkpoint_metrics (minerva.pipelines.experiment.Experiment attribute) checkpoint_path (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback attribute) checkpoint_paths (minerva.pipelines.experiment.Experiment property) classes (minerva.losses.dice.DiceLoss attribute) ClassicMLModel (class in minerva.models.nets.classic_ml_pipeline) ClassRatioCrop (class in minerva.transforms.context_transform) cleanup() (minerva.pipelines.experiment.Experiment method) cli_main() (in module minerva.pipelines.lightning_pipeline) clone() (minerva.pipelines.base.Pipeline static method) (minerva.pipelines.Pipeline static method) close() (minerva.utils.output.Tee method) cls (minerva.models.nets.image.vit.VIT_MLAHead attribute) cls_token (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.nets.image.vit.SetrVitBackbone attribute) (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) ClusteringAnalysis (class in minerva.analysis.clustering_analysis) CNN (class in minerva.models.nets.cpc_networks) CNN_HaEtAl_1D (class in minerva.models.nets.time_series.cnns) CNN_HaEtAl_1D_Backbone (class in minerva.models.nets.time_series.cnns) CNN_HaEtAl_2D (class in minerva.models.nets.time_series.cnns) CNN_HaEtAl_2D_Backbone (class in minerva.models.nets.time_series.cnns) CNN_PF_2D (class in minerva.models.nets.time_series.cnns) CNN_PF_Backbone (class in minerva.models.nets.time_series.cnns) CNN_PFF_2D (class in minerva.models.nets.time_series.cnns) collate_fn (minerva.data.readers.multi_reader.MultiReader attribute) ColorJitter (class in minerva.transforms) (class in minerva.transforms.transform) colors (minerva.analysis.model_analysis.TSNEAnalysis attribute) columns (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) columns_to_select (minerva.data.readers.tabular_reader.TabularReader attribute) (minerva.data.readers.TabularReader attribute) ComplexityPerformanceAnalysis (class in minerva.analysis.complexity_performance_analysis) compute() (minerva.analysis.clustering_analysis.ClusteringAnalysis method) (minerva.analysis.complexity_performance_analysis.ComplexityPerformanceAnalysis method) (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy method) (minerva.analysis.metrics.BalancedAccuracy method) (minerva.analysis.metrics.pixel_accuracy.PixelAccuracy method) (minerva.analysis.metrics.PixelAccuracy method) (minerva.analysis.model_analysis._ModelAnalysis method) (minerva.analysis.model_analysis.TSNEAnalysis method) compute_cycles (minerva.losses.topological_loss.AlephPersistenHomologyCalculation attribute) compute_nce_loss() (minerva.models.ssl.cpc.CPC method) compute_score() (minerva.losses.dice.DiceLoss method) ConcatDataset (class in minerva.data.datasets.base) config (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) configure_optimizers() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.barlowtwins.BarlowTwins method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.diet.DIET method) (minerva.models.ssl.fastsiam.FastSiam method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.simsiam.SimSiam method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) consistent_iterating (minerva.samplers.domain_sampler.RandomDomainSampler attribute) constant_values (minerva.transforms.PadCrop attribute) (minerva.transforms.transform.PadCrop attribute) ContextDataset (class in minerva.data.datasets.context_dataset) ContextTransformPipeline (class in minerva.transforms.context_transform) contiguous (minerva.models.adapters.PermuteAdapter attribute) contrast (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) ContrastiveTransform (class in minerva.transforms) (class in minerva.transforms.transform) conv (minerva.models.nets.cpc_networks.ConvBlock attribute) (minerva.models.nets.image.setr.ConvModule attribute) (minerva.models.nets.image.unet._OutConv attribute) (minerva.models.nets.image.unetplusplus_resnet50.ConvBlock attribute) (minerva.models.nets.lfr_har_architectures.HARSCnnEncoder attribute) (minerva.models.nets.lfr_har_architectures.LFR_HAR_Projector attribute) (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) (minerva.models.nets.tnc.SamePadConv attribute) conv0_1 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) conv0_2 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) conv0_3 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) conv1 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) (minerva.models.nets.image.vit.DecoderBlock attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.tnc.ConvBlock attribute) conv1_1 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) conv1_2 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) conv2 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.vit.DecoderBlock attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.tnc.ConvBlock attribute) conv2_1 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) Conv2dReLU (class in minerva.models.nets.image.vit) conv3 (minerva.models.nets.image.wisenet._WiseNet attribute) conv4 (minerva.models.nets.image.wisenet._WiseNet attribute) conv5 (minerva.models.nets.image.wisenet._WiseNet attribute) conv6 (minerva.models.nets.image.wisenet._WiseNet attribute) conv7 (minerva.models.nets.image.wisenet._WiseNet attribute) conv8 (minerva.models.nets.image.wisenet._WiseNet attribute) conv_block (minerva.models.nets.time_series.resnet._ResNet1D attribute) conv_feature1 (minerva.models.nets.image.vit.DecoderCup attribute) conv_feature2 (minerva.models.nets.image.vit.DecoderCup attribute) conv_feature3 (minerva.models.nets.image.vit.DecoderCup attribute) conv_feature4 (minerva.models.nets.image.vit.DecoderCup attribute) conv_kernel (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_mid_channels (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_more (minerva.models.nets.image.vit.DecoderCup attribute) conv_num_layers (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_padding (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) conv_seg (minerva.models.nets.image.setr._SETRUPHead attribute) ConvBlock (class in minerva.models.nets.cpc_networks) (class in minerva.models.nets.image.unetplusplus_resnet50) (class in minerva.models.nets.tnc) ConvModule (class in minerva.models.nets.image.setr) Convolutional1DEncoder (class in minerva.models.nets.cpc_networks) ConvolutionalBlock (class in minerva.models.nets.time_series.resnet) ConvTAEDecoder (class in minerva.models.nets.conv_autoencoders_encoders) ConvTAEEncoder (class in minerva.models.nets.conv_autoencoders_encoders) coords (minerva.transforms.Crop attribute) (minerva.transforms.transform.Crop attribute) cosine_schedule() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) CPC (class in minerva.models.ssl.cpc) create_from_dict() (minerva.models.nets.image.setr.SETR_PUP static method) (minerva.models.nets.SETR_PUP static method) create_model_and_load_backbone() (minerva.pipelines.experiment.InstantiatedModel method) (minerva.pipelines.experiment.ModelInstantiator method) create_model_randomly_initialized() (minerva.pipelines.experiment.InstantiatedModel method) (minerva.pipelines.experiment.ModelInstantiator method) criterion (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.losses.xtent_loss.NTXentLoss attribute) (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) Crop (class in minerva.transforms) (class in minerva.transforms.transform) crop_size (minerva.transforms.random_transform.RandomCrop attribute) (minerva.transforms.RandomCrop attribute) CSVReader (class in minerva.data.readers) (class in minerva.data.readers.csv_reader) D data (minerva.data.data_module_tools.SimpleDataset attribute) (minerva.data.datasets.har_xu_23.HarDataset attribute) (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline property) data_dtype (minerva.data.data_module_tools.RandomDataModule attribute) data_module (minerva.pipelines.experiment.Experiment attribute) data_path (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.datasets.har_xu_23.HarDataset attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) data_percentage (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) data_raw (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) data_shape (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.data.readers.tabular_reader.TabularReader attribute) (minerva.data.readers.TabularReader attribute) data_split (minerva.analysis.clustering_analysis.ClusteringAnalysis attribute) data_X (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) data_Y (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) DataModuleDescriptor (class in minerva.data.data_modules.datamodule_descriptor) DataOnlyTransform (class in minerva.transforms.context_transform) dataset (minerva.samplers.domain_sampler.RandomDomainSampler attribute) dataset_name (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) datasets (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) DataTransform_FD() (minerva.transforms.tfc.TFC_Transforms method) DataTransform_TD() (minerva.transforms.tfc.TFC_Transforms method) DCNN (class in minerva.models.nets.dcnn) deactivate_requires_grad() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) decoder (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.vit.VisionTransformer attribute) (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) decoder_blocks (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) decoder_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) decoder_norm (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) decoder_num_classes (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) decoder_pos_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) decoder_pred (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) DecoderBlock (class in minerva.models.nets.image.vit) DecoderCup (class in minerva.models.nets.image.vit) deep_supervision (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) DeepLabV3 (class in minerva.models.nets) (class in minerva.models.nets.image.deeplabv3) DeepLabV3Backbone (class in minerva.models.nets.image.deeplabv3) DeepLabV3PredictionHead (class in minerva.models.nets.image.deeplabv3) DeepLabV3RegressionHead (class in minerva.models.nets.image.deeplabv3) DeepLabV3ResNet50Backbone (class in minerva.models.nets.image.unetplusplus_resnet50) degrees (minerva.transforms.random_transform.RandomRotation attribute) (minerva.transforms.RandomRotation attribute) (minerva.transforms.Rotation attribute) (minerva.transforms.transform.Rotation attribute) delimiter (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) deprecated() (in module minerva.utils.deprecated) deprecated_class() (in module minerva.utils.deprecated) depth (minerva.models.nets.time_series.inception_time._InceptionTime attribute) detect_mask (minerva.transforms.transform.Resize attribute) device (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) devices (minerva.pipelines.experiment.Experiment attribute) df (minerva.data.readers.tabular_reader.TabularReader attribute) (minerva.data.readers.TabularReader attribute) diag_lambda (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss attribute) dice_score() (in module minerva.losses._functional) DiceLoss (class in minerva.losses.dice) DIET (class in minerva.models.ssl.diet) DIETLinear (class in minerva.models.nets.diet_linear) DilatedConvEncoder (class in minerva.models.nets.tnc) dilation (minerva.models.nets.image.vit.MMAdaptivePadding attribute) dim (minerva.losses.negative_cossine_similatiry.NegativeCosineSimilarity attribute) direction (minerva.transforms.Gradient attribute) (minerva.transforms.transform.Gradient attribute) directions (minerva.transforms.Gradient attribute) (minerva.transforms.transform.Gradient attribute) Discriminator_TNC (class in minerva.models.nets.tnc) domain_labels (minerva.samplers.domain_sampler.RandomDomainSampler attribute) domains (minerva.samplers.domain_sampler.RandomDomainSampler attribute) double_conv (minerva.models.nets.image.unet._DoubleConv attribute) down1 (minerva.models.nets.image.unet._UNet attribute) down2 (minerva.models.nets.image.unet._UNet attribute) down3 (minerva.models.nets.image.unet._UNet attribute) down4 (minerva.models.nets.image.unet._UNet attribute) dpp() (in module minerva.models.ssl.lfr) drop_after_pos (minerva.models.nets.image.vit.SetrVitBackbone attribute) drop_last (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) drop_path (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) drop_path1 (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) drop_path2 (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) drop_prob (minerva.models.nets.image.setr.MMDropPath attribute) dropout (minerva.models.nets.cpc_networks.ConvBlock attribute) dropout_factor (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) dropout_layer (minerva.models.nets.image.vit.MMFFN attribute) (minerva.models.nets.image.vit.MMMultiheadAttention attribute) dtype (minerva.transforms.CastTo attribute) (minerva.transforms.transform.CastTo attribute) dynamic_feat_size() (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed method) (minerva.models.nets.image.vit_local.PatchEmbed method) dynamic_img_pad (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed attribute) (minerva.models.nets.image.vit_local.PatchEmbed attribute) dynamic_img_size (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) E embed_dims (minerva.models.nets.image.vit.SetrVitBackbone attribute) EmbeddingLoggerCallback (class in minerva.callback.embedding_logger_callback) encode_position (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) encoder (minerva.models.nets.cpc_networks.CNN attribute) (minerva.models.nets.cpc_networks.Convolutional1DEncoder attribute) (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) encoder_out_indices (minerva.models.nets.image.setr._SetR_PUP attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) encoding_size (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) (minerva.models.nets.tnc.RnnEncoder attribute) ensure_tensor() (minerva.models.ssl.fastsiam.FastSiam method) epoch_var_name (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback attribute) eps (minerva.losses.dice.DiceLoss attribute) (minerva.losses.negative_cossine_similatiry.NegativeCosineSimilarity attribute) (minerva.losses.xtent_loss.NTXentLoss attribute) epsilon (minerva.data.data_modules.har_xu_23.HarDataModule attribute) evaluation_metrics (minerva.pipelines.experiment.Experiment attribute) exclude_set (minerva.optimizers.LARS attribute) (minerva.optimizers.lars.LARS attribute) execution_id (minerva.pipelines.experiment.Experiment attribute) Experiment (class in minerva.pipelines.experiment) experiment_name (minerva.pipelines.experiment.Experiment attribute) ExtractedModel (class in minerva.models.loaders) F FastSiam (class in minerva.models.ssl.fastsiam) fastsiam_loss() (minerva.models.ssl.fastsiam.FastSiam static method) fc (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.diet_linear.DIETLinear attribute) (minerva.models.nets.SimpleSupervisedModel attribute) fc1 (minerva.models.nets.dcnn.DCNN attribute) fc2 (minerva.models.nets.dcnn.DCNN attribute) fc_input_channels (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) fc_input_features (minerva.models.nets.time_series.inception_time.InceptionTime attribute) (minerva.models.nets.time_series.resnet.ResNet1DBase attribute) (minerva.models.nets.time_series.ts2vec_classifier.TS2VecClassifier attribute) fc_num_layers (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) feat_ratio() (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed method) (minerva.models.nets.image.vit_local.PatchEmbed method) feature_column_prefixes (minerva.data.datasets.har_xu_23.HarDataset attribute) feature_extractor (minerva.models.nets.tnc.TSEncoder attribute) feature_info (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) feature_preffix (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) feature_prefixes (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) features (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) features_as_channels (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) ffn (minerva.models.nets.image.vit.MMTransformerEncoderLayer attribute) ffns (minerva.models.nets.image.vit_local.vit.ParallelThingsBlock attribute) file (minerva.utils.output.Tee attribute) files (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) filters (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) find() (minerva.losses.topological_loss.UnionFind method) first_pad_size (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) first_padder (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) fix_init_weight() (minerva.models.nets.image.vit_local.VisionTransformer method) (minerva.models.nets.image.vit_local.vit.VisionTransformer method) flatten (minerva.data.datasets.har_xu_23.HarDataset attribute) (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.ssl.diet.DIET attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) Flip (class in minerva.transforms) (class in minerva.transforms.transform) flush() (minerva.utils.output.Tee method) forward() (minerva.engines.engine._Inferencer method) (minerva.losses.batchwise_barlowtwins_loss.BarlowTwinsLoss method) (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss method) (minerva.losses.dice.DiceLoss method) (minerva.losses.dice.MultiClassDiceCELoss method) (minerva.losses.negative_cossine_similatiry.NegativeCosineSimilarity method) (minerva.losses.ntxent_loss_poly.NTXentLoss_poly method) (minerva.losses.topological_loss.TopologicalLoss method) (minerva.losses.topological_loss.TopologicalSignatureDistance method) (minerva.losses.weighted_dice_loss.BinaryWeightedDiceLoss method) (minerva.losses.weighted_dice_loss.WeightedDiceLoss method) (minerva.losses.xtent_loss.NTXentLoss method) (minerva.models.finetune_adapters.LoRA method) (minerva.models.loaders.ExtractedModel method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder method) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder method) (minerva.models.nets.cpc_networks.CNN method) (minerva.models.nets.cpc_networks.ConvBlock method) (minerva.models.nets.cpc_networks.Convolutional1DEncoder method) (minerva.models.nets.cpc_networks.Genc_Gar method) (minerva.models.nets.cpc_networks.HARCPCAutoregressive method) (minerva.models.nets.cpc_networks.HARPredictionHead method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.cpc_networks.PredictionNetwork method) (minerva.models.nets.cpc_networks.ResNetEncoder method) (minerva.models.nets.dcnn.DCNN method) (minerva.models.nets.DeepLabV3 method) (minerva.models.nets.diet_linear.AdaptedHead method) (minerva.models.nets.diet_linear.DIETLinear method) (minerva.models.nets.image.deeplabv3.DeepLabV3 method) (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone method) (minerva.models.nets.image.deeplabv3.DeepLabV3PredictionHead method) (minerva.models.nets.image.deeplabv3.DeepLabV3RegressionHead method) (minerva.models.nets.image.setr._SetR_PUP method) (minerva.models.nets.image.setr._SETRUPHead method) (minerva.models.nets.image.setr.ConvModule method) (minerva.models.nets.image.setr.MMDropPath method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.unet._DoubleConv method) (minerva.models.nets.image.unet._Down method) (minerva.models.nets.image.unet._OutConv method) (minerva.models.nets.image.unet._UNet method) (minerva.models.nets.image.unet._Up method) (minerva.models.nets.image.unetplusplus_resnet50.ConvBlock method) (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone method) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 method) (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 method) (minerva.models.nets.image.vit.DecoderBlock method) (minerva.models.nets.image.vit.DecoderCup method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.image.vit.MLAHead method) (minerva.models.nets.image.vit.MMAdaptivePadding method) (minerva.models.nets.image.vit.MMFFN method) (minerva.models.nets.image.vit.MMMultiheadAttention method) (minerva.models.nets.image.vit.MMPatchEmbed method) (minerva.models.nets.image.vit.MMTransformerEncoderLayer method) (minerva.models.nets.image.vit.SetrVitBackbone method) (minerva.models.nets.image.vit.VisionTransformer method) (minerva.models.nets.image.vit.VIT_MLAHead method) (minerva.models.nets.image.vit_local.Block method) (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed method) (minerva.models.nets.image.vit_local.PatchEmbed method) (minerva.models.nets.image.vit_local.VisionTransformer method) (minerva.models.nets.image.vit_local.vit.Attention method) (minerva.models.nets.image.vit_local.vit.Block method) (minerva.models.nets.image.vit_local.vit.LayerScale method) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock method) (minerva.models.nets.image.vit_local.vit.ParallelThingsBlock method) (minerva.models.nets.image.vit_local.vit.ResPostBlock method) (minerva.models.nets.image.vit_local.vit.VisionTransformer method) (minerva.models.nets.image.wisenet._WiseNet method) (minerva.models.nets.lfr_har_architectures.HARSCnnEncoder method) (minerva.models.nets.lfr_har_architectures.LFR_HAR_Predictor method) (minerva.models.nets.lfr_har_architectures.LFR_HAR_Projector method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.siamese_network_wrapper.SiameseNetworkWrapper method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.nets.tfc.IgnoreWhenBatch1 method) (minerva.models.nets.tfc.TFC_Backbone method) (minerva.models.nets.tfc.TFC_Conv_Block method) (minerva.models.nets.tfc.TFC_PredicionHead method) (minerva.models.nets.tfc.TFC_Standard_Projector method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D_Backbone method) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D_Backbone method) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone method) (minerva.models.nets.time_series.cnns.ZeroPadder2D method) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder method) (minerva.models.nets.time_series.inception_time._InceptionTime method) (minerva.models.nets.time_series.inception_time.InceptionModule method) (minerva.models.nets.time_series.inception_time.ShortcutLayer method) (minerva.models.nets.time_series.resnet._ResNet1D method) (minerva.models.nets.time_series.resnet.ConvolutionalBlock method) (minerva.models.nets.time_series.resnet.ResNetBlock method) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D method) (minerva.models.nets.tnc.ConvBlock method) (minerva.models.nets.tnc.DilatedConvEncoder method) (minerva.models.nets.tnc.Discriminator_TNC method) (minerva.models.nets.tnc.ResNetEncoder method) (minerva.models.nets.tnc.RnnEncoder method) (minerva.models.nets.tnc.SamePadConv method) (minerva.models.nets.tnc.TSEncoder method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.barlowtwins.BarlowTwins method) (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.diet.DIET method) (minerva.models.ssl.fastsiam.FastSiam method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.simsiam.SimSiam method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) (minerva.utils.upsample.Upsample method) forward_decoder() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) forward_encoder() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) forward_features() (minerva.models.nets.image.vit.VisionTransformer method) forward_loss() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) forward_momentum() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) forward_once() (minerva.models.nets.siamese_network_wrapper.SiameseNetworkWrapper method) fraction (minerva.data.datasets.base.FractionalRandomSubset attribute) (minerva.data.datasets.base.FractionalSubset attribute) FractionalRandomSubset (class in minerva.data.datasets.base) FractionalSubset (class in minerva.data.datasets.base) freeze_backbone (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) freeze_weights() (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone method) frequency_encoder (minerva.models.nets.tfc.TFC_Backbone attribute) frequency_projector (minerva.models.nets.tfc.TFC_Backbone attribute) from_logits (minerva.losses.dice.DiceLoss attribute) FromModel (class in minerva.models.loaders) FromPretrained (class in minerva.models.loaders) full_dataset_from_dataloader() (in module minerva.data.data_module_tools) full_info (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) fused_attn (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) G g_ar (minerva.models.nets.cpc_networks.Genc_Gar attribute) (minerva.models.ssl.cpc.CPC attribute) g_enc (minerva.models.nets.cpc_networks.Genc_Gar attribute) (minerva.models.ssl.cpc.CPC attribute) gamma (minerva.models.nets.image.vit_local.vit.LayerScale attribute) gather_distributed (minerva.losses.batchwise_barlowtwins_loss.BarlowTwinsLoss attribute) Genc_Gar (class in minerva.models.nets.cpc_networks) generate_gradient() (minerva.transforms.Gradient method) (minerva.transforms.transform.Gradient method) get_1d_sincos_pos_embed_from_grid() (in module minerva.utils.position_embedding) get_2d_sincos_pos_embed() (in module minerva.utils.position_embedding) get_2d_sincos_pos_embed_from_grid() (in module minerva.utils.position_embedding) get_full_data_split() (in module minerva.data.data_module_tools) get_init_weights_vit() (in module minerva.models.nets.image.vit_local.vit) get_lr() (minerva.optimizers.lr_schedulers.PolyLRScheduler method) (minerva.schedulers.warmup_cosine_annealing.WarmupCosineAnnealingLR method) get_pad_shape() (minerva.models.nets.image.vit.MMAdaptivePadding method) get_parser() (in module minerva.cli.experiment) get_representations() (minerva.models.nets.tfc.TFC_Backbone method) get_run_id() (in module minerva.pipelines.experiment) get_signal_image() (minerva.transforms.activity_image.ActivityImageTransforms method) get_split_dataloader() (in module minerva.data.data_module_tools) get_trainer() (in module minerva.pipelines.experiment) get_weight() (minerva.losses.weighted_dice_loss.BinaryWeightedDiceLoss method) (minerva.losses.weighted_dice_loss.WeightedDiceLoss method) global_avg_pool (minerva.models.nets.time_series.resnet._ResNet1D attribute) (minerva.models.ssl.fastsiam.FastSiam attribute) global_pool (minerva.models.nets.image.vit.VisionTransformer attribute) global_pool_nlc() (in module minerva.models.nets.image.vit_local.vit) grad_checkpointing (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) Gradient (class in minerva.transforms) (class in minerva.transforms.transform) GrayScale (class in minerva.transforms) (class in minerva.transforms.transform) H har_test (minerva.data.data_modules.har_xu_23.HarDataModule attribute) har_train (minerva.data.data_modules.har_xu_23.HarDataModule attribute) har_val (minerva.data.data_modules.har_xu_23.HarDataModule attribute) HARCPCAutoregressive (class in minerva.models.nets.cpc_networks) HarDataModule (class in minerva.data.data_modules.har_xu_23) HARDataModuleCPC (class in minerva.data.data_modules.har_rodrigues_24) HarDataset (class in minerva.data.datasets.har_xu_23) HARDatasetCPC (class in minerva.data.datasets.har_rodrigues_24) HARPredictionHead (class in minerva.models.nets.cpc_networks) HARSCnnEncoder (class in minerva.models.nets.lfr_har_architectures) has_class_token (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) head (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) head2 (minerva.models.nets.image.vit.MLAHead attribute) head3 (minerva.models.nets.image.vit.MLAHead attribute) head4 (minerva.models.nets.image.vit.MLAHead attribute) head5 (minerva.models.nets.image.vit.MLAHead attribute) head_dim (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) head_lr_factor (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) height (minerva.analysis.model_analysis.TSNEAnalysis attribute) hidden_dim (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) hidden_dims (minerva.models.nets.tnc.TSEncoder attribute) hidden_size (minerva.models.nets.tnc.RnnEncoder attribute) hue (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) I Identity (class in minerva.transforms) (class in minerva.transforms.transform) ignore_index (minerva.losses.dice.DiceLoss attribute) (minerva.transforms.context_transform.ClassRatioCrop attribute) IgnoreWhenBatch1 (class in minerva.models.nets.tfc) img_size (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.image.vit.SetrVitBackbone attribute) (minerva.models.nets.image.vit.VIT_MLAHead attribute) (minerva.models.nets.SETR_PUP attribute) IMUCNN (class in minerva.models.nets.time_series.imu_transformer) IMUTransformerEncoder (class in minerva.models.nets.time_series.imu_transformer) in_channel (minerva.models.nets.tnc.RnnEncoder attribute) in_channels (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.nets.time_series.resnet.ConvolutionalBlock attribute) (minerva.models.nets.time_series.resnet.ResNetBlock attribute) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) in_chans (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) in_features (minerva.models.nets.diet_linear.DIETLinear attribute) in_index (minerva.models.nets.image.setr._SETRUPHead attribute) in_norm (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) in_proj (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) in_split (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) inc (minerva.models.nets.image.unet._UNet attribute) InceptionModule (class in minerva.models.nets.time_series.inception_time) InceptionTime (class in minerva.models.nets.time_series.inception_time) include_middle (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) indent_text() (in module minerva.utils.string_ops) index (minerva.transforms.Indexer attribute) (minerva.transforms.transform.Indexer attribute) Indexer (class in minerva.transforms) (class in minerva.transforms.transform) IndexReader (class in minerva.data.readers) (class in minerva.data.readers.index_reader) indices (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) inferencer (minerva.engines.patch_inferencer_engine.PatchInferencer attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencer attribute) information (minerva.pipelines.experiment.ModelConfig attribute) init_values (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) init_weights() (minerva.models.finetune_adapters.LoRA method) (minerva.models.nets.image.setr.ConvModule method) (minerva.models.nets.image.vit_local.VisionTransformer method) (minerva.models.nets.image.vit_local.vit.ResPostBlock method) (minerva.models.nets.image.vit_local.vit.VisionTransformer method) init_weights_vit_jax() (in module minerva.models.nets.image.vit_local.vit) init_weights_vit_moco() (in module minerva.models.nets.image.vit_local.vit) init_weights_vit_timm() (in module minerva.models.nets.image.vit_local.vit) initialize_weights() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) inplace (minerva.models.nets.image.vit_local.vit.LayerScale attribute) input_dims (minerva.models.nets.tnc.TSEncoder attribute) input_fc (minerva.models.nets.tnc.TSEncoder attribute) input_proj (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) input_shape (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) (minerva.models.nets.time_series.imu_transformer.IMUCNN attribute) (minerva.models.nets.time_series.imu_transformer.IMUTransformerEncoder attribute) (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) (minerva.models.nets.time_series.resnet._ResNet1D attribute) (minerva.pipelines.experiment.ModelInformation attribute) input_size (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) (minerva.models.nets.tnc.Discriminator_TNC attribute) input_tensor_shape (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) instantiate_cls() (in module minerva.utils.instantiators) InstantiatedModel (class in minerva.pipelines.experiment) instantiator (minerva.pipelines.experiment.ModelConfig attribute) IntermediateLayerGetter (class in minerva.models.loaders) interpolate_mode (minerva.models.nets.DeepLabV3 attribute) (minerva.models.nets.image.deeplabv3.DeepLabV3 attribute) (minerva.models.nets.image.vit.SetrVitBackbone attribute) interpolate_pos_embed() (in module minerva.models.nets.image.vit) (in module minerva.utils.position_embedding) interpolate_pos_embeddings() (minerva.models.nets.image.vit.SetrVitBackbone method) J jitter() (minerva.transforms.tfc.TFC_Transforms method) jitter_operation (minerva.transforms.tfc.TFC_Transforms attribute) jitter_ration (minerva.transforms.tfc.TFC_Transforms attribute) K K (minerva.models.ssl.fastsiam.FastSiam attribute) k_norm (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) keep_aspect_ratio (minerva.transforms.transform.Resize attribute) kernel_size (minerva.models.adapters.MaxPoolingTransposingSqueezingAdapter attribute) (minerva.models.nets.image.vit.MMAdaptivePadding attribute) (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) key_index (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) L label (minerva.data.data_module_tools.SimpleDataset attribute) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) label_dtype (minerva.data.data_module_tools.RandomDataModule attribute) label_names (minerva.analysis.model_analysis.TSNEAnalysis attribute) label_only (minerva.transforms.transform.Unsqueeze attribute) (minerva.transforms.Unsqueeze attribute) label_shape (minerva.data.data_module_tools.RandomDataModule attribute) labels (minerva.data.datasets.har_xu_23.HarDataset attribute) lambda_param (minerva.losses.batchwise_barlowtwins_loss.BarlowTwinsLoss attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) LARS (class in minerva.optimizers) (class in minerva.optimizers.lars) latent_norm (minerva.losses.topological_loss.TopologicalLoss attribute) layer1 (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) layer2 (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) layer3 (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) layer4 (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) layers (minerva.models.loaders.IntermediateLayerGetter attribute) (minerva.models.nets.image.vit.MMFFN attribute) (minerva.models.nets.image.vit.SetrVitBackbone attribute) LayerScale (class in minerva.models.nets.image.vit_local.vit) LazyPaddedPatchedArrayReader (class in minerva.data.readers) (class in minerva.data.readers.patched_array_reader) LazyPaddedPatchedMDIOReader (class in minerva.data.readers) (class in minerva.data.readers.mdio_reader) LazyPaddedPatchedZarrReader (class in minerva.data.readers) (class in minerva.data.readers.zarr_reader) LearnFromRandomnessModel (class in minerva.models.ssl) (class in minerva.models.ssl.lfr) learning_rate (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.barlowtwins.BarlowTwins attribute) (minerva.models.ssl.cpc.CPC attribute) (minerva.models.ssl.diet.DIET attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) (minerva.models.ssl.simsiam.SimSiam attribute) (minerva.models.ssl.tfc.TFC_Model attribute) (minerva.models.ssl.tnc.TNC attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) legend_title (minerva.analysis.model_analysis.TSNEAnalysis attribute) len (minerva.data.readers.index_reader.IndexReader attribute) (minerva.data.readers.IndexReader attribute) LFR_HAR_Predictor (class in minerva.models.nets.lfr_har_architectures) LFR_HAR_Predictor_List (class in minerva.models.nets.lfr_har_architectures) LFR_HAR_Projector (class in minerva.models.nets.lfr_har_architectures) LFR_HAR_Projector_List (class in minerva.models.nets.lfr_har_architectures) limit_predict_batches (minerva.pipelines.experiment.Experiment attribute) limit_test_batches (minerva.pipelines.experiment.Experiment attribute) limit_train_batches (minerva.pipelines.experiment.Experiment attribute) limit_val_batches (minerva.pipelines.experiment.Experiment attribute) linear_head (minerva.models.ssl.diet.DIET attribute) LinearClassifier (class in minerva.models.nets.cpc_networks) LitUNetPlusPlusDeepLabV3 (class in minerva.models.nets.image.unetplusplus_resnet50) ln1 (minerva.models.nets.image.vit.MMTransformerEncoderLayer attribute) ln2 (minerva.models.nets.image.vit.MMTransformerEncoderLayer attribute) load_backbone() (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.SetrVitBackbone method) (minerva.models.nets.SETR_PUP method) load_dataset() (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC method) load_model_from_checkpoint() (minerva.pipelines.experiment.InstantiatedModel method) (minerva.pipelines.experiment.ModelInstantiator method) load_predictions() (in module minerva.pipelines.experiment) load_predictions_of_ckpt() (minerva.pipelines.experiment.Experiment method) load_results() (in module minerva.pipelines.experiment) load_results_of_ckpt() (minerva.pipelines.experiment.Experiment method) LoadableModule (class in minerva.models.loaders) log_dir (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) log_loss (minerva.losses.dice.DiceLoss attribute) log_outputs (minerva.pipelines.experiment.Experiment attribute) logger (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback attribute) logits (minerva.models.nets.tfc.TFC_PredicionHead attribute) logits_dim (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) logits_simple (minerva.models.nets.tfc.TFC_PredicionHead attribute) LoRA (class in minerva.models.finetune_adapters) loss (minerva.models.ssl.diet.DIET attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) loss_fn (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) (minerva.models.nets.image.vit.VisionTransformer attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) (minerva.models.ssl.tnc.TNC attribute) loss_long (minerva.models.nets.DeepLabV3 attribute) (minerva.models.nets.image.deeplabv3.DeepLabV3 attribute) lower_part (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) lr (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) (minerva.models.ssl.fastsiam.FastSiam attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) lr_scheduler (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) lr_scheduler_kwargs (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) ls (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) ls1 (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) ls2 (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) lsoftmax (minerva.models.ssl.cpc.CPC attribute) M mae_vit_base_patch16 (in module minerva.models.nets.image.vit) mae_vit_base_patch16D4d256 (in module minerva.models.nets.image.vit) mae_vit_huge_patch14 (in module minerva.models.nets.image.vit) mae_vit_large_patch16 (in module minerva.models.nets.image.vit) mae_vit_large_patch16D4d256 (in module minerva.models.nets.image.vit) mae_vit_small_patch16 (in module minerva.models.nets.image.vit) main() (in module minerva.cli.experiment) map_labels (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) marker_symbols (minerva.analysis.model_analysis.TSNEAnalysis attribute) mask_padding_value (minerva.transforms.Padding attribute) (minerva.transforms.transform.Padding attribute) mask_samples_from_same_repr (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) mask_token (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) MaskedAutoencoderViT (class in minerva.models.nets.image.vit) MaskedAutoEncoderViT (class in minerva.models.ssl.vitmae) match_edges (minerva.losses.topological_loss.TopologicalSignatureDistance attribute) matrix_A (minerva.models.finetune_adapters.LoRA attribute) matrix_B (minerva.models.finetune_adapters.LoRA attribute) max_attempts (minerva.transforms.context_transform.ClassRatioCrop attribute) max_backbone_training_steps (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) max_epochs (minerva.pipelines.experiment.Experiment attribute) max_iter (minerva.optimizers.lr_schedulers.PolyLRScheduler attribute) max_pool (minerva.models.nets.tnc.Discriminator_TNC attribute) max_pooling_adapter() (minerva.models.adapters.MaxPoolingTransposingSqueezingAdapter method) max_ratio (minerva.transforms.context_transform.ClassRatioCrop attribute) maxpool (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) maxpool_conv (minerva.models.nets.image.unet._Down attribute) MaxPoolingTransposingSqueezingAdapter (class in minerva.models.adapters) mc_sample_size (minerva.data.data_modules.har_xu_23.HarDataModule attribute) (minerva.data.datasets.har_xu_23.TNCDataset attribute) (minerva.models.ssl.tnc.TNC attribute) mdio_path (minerva.data.readers.LazyPaddedPatchedMDIOReader attribute) (minerva.data.readers.mdio_reader.LazyPaddedPatchedMDIOReader attribute) (minerva.data.readers.mdio_reader.PatchedMDIOReader attribute) (minerva.data.readers.PatchedMDIOReader attribute) mean (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) merge() (minerva.losses.topological_loss.UnionFind method) method (minerva.transforms.GrayScale attribute) (minerva.transforms.random_transform.RandomGrayScale attribute) (minerva.transforms.RandomGrayScale attribute) (minerva.transforms.transform.GrayScale attribute) metrics (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) (minerva.models.ssl.tfc.TFC_Model attribute) min_batches (minerva.samplers.domain_sampler.RandomDomainSampler attribute) min_lr (minerva.optimizers.lr_schedulers.PolyLRScheduler attribute) (minerva.schedulers.warmup_cosine_annealing.WarmupCosineAnnealingLR attribute) minerva module minerva.analysis module minerva.analysis.clustering_analysis module minerva.analysis.complexity_performance_analysis module minerva.analysis.metrics module minerva.analysis.metrics.balanced_accuracy module minerva.analysis.metrics.pixel_accuracy module minerva.analysis.model_analysis module minerva.callback.embedding_logger_callback module minerva.callback.specific_checkpoint_callback module minerva.cli module minerva.cli.experiment module minerva.data module minerva.data.data_module_tools module minerva.data.data_modules module minerva.data.data_modules.base module minerva.data.data_modules.datamodule_descriptor module minerva.data.data_modules.har module minerva.data.data_modules.har_rodrigues_24 module minerva.data.data_modules.har_xu_23 module minerva.data.datasets module minerva.data.datasets.base module minerva.data.datasets.binary_tree_subset module minerva.data.datasets.context_dataset module minerva.data.datasets.har_rodrigues_24 module minerva.data.datasets.har_xu_23 module minerva.data.datasets.series_dataset module minerva.data.readers module minerva.data.readers.base_file_iterator module minerva.data.readers.csv_reader module minerva.data.readers.index_reader module minerva.data.readers.mdio_reader module minerva.data.readers.multi_reader module minerva.data.readers.numpy_reader module minerva.data.readers.patched_array_reader module minerva.data.readers.png_reader module minerva.data.readers.reader module minerva.data.readers.tabular_reader module minerva.data.readers.text_reader module minerva.data.readers.tiff_reader module minerva.data.readers.zarr_reader module minerva.engines.engine module minerva.engines.patch_inferencer_engine module minerva.engines.slidingwindow_inferencer_engine module minerva.losses module minerva.losses._functional module minerva.losses.batchwise_barlowtwins_loss module minerva.losses.dice module minerva.losses.negative_cossine_similatiry module minerva.losses.ntxent_loss_poly module minerva.losses.topological_loss module minerva.losses.weighted_dice_loss module minerva.losses.xtent_loss module minerva.models module minerva.models.adapters module minerva.models.finetune_adapters module minerva.models.loaders module minerva.models.nets module minerva.models.nets.base module minerva.models.nets.classic_ml_pipeline module minerva.models.nets.conv_autoencoders_encoders module minerva.models.nets.cpc_networks module minerva.models.nets.dcnn module minerva.models.nets.diet_linear module minerva.models.nets.image.deeplabv3 module minerva.models.nets.image.setr module minerva.models.nets.image.unet module minerva.models.nets.image.unetplusplus_resnet50 module minerva.models.nets.image.vit module minerva.models.nets.image.vit_local module minerva.models.nets.image.vit_local.patch_embed module minerva.models.nets.image.vit_local.vit module minerva.models.nets.image.wisenet module minerva.models.nets.lfr_har_architectures module minerva.models.nets.mlp module minerva.models.nets.siamese_network_wrapper module minerva.models.nets.tfc module minerva.models.nets.time_series.cnns module minerva.models.nets.time_series.imu_transformer module minerva.models.nets.time_series.inception_time module minerva.models.nets.time_series.resnet module minerva.models.nets.time_series.ts2vec_classifier module minerva.models.nets.tnc module minerva.models.ssl module minerva.models.ssl.autoencoder module minerva.models.ssl.barlowtwins module minerva.models.ssl.byol module minerva.models.ssl.cpc module minerva.models.ssl.diet module minerva.models.ssl.fastsiam module minerva.models.ssl.lfr module minerva.models.ssl.simclr module minerva.models.ssl.simsiam module minerva.models.ssl.tfc module minerva.models.ssl.tnc module minerva.models.ssl.topological_autoencoder module minerva.models.ssl.vitmae module minerva.optimizers module minerva.optimizers.lars module minerva.optimizers.lr_schedulers module minerva.pipelines module minerva.pipelines.base module minerva.pipelines.experiment module minerva.pipelines.lightning_pipeline module minerva.samplers module minerva.samplers.domain_sampler module minerva.schedulers.warmup_cosine_annealing module minerva.transforms module minerva.transforms.activity_image module minerva.transforms.context_transform module minerva.transforms.moco_augmentations module minerva.transforms.random_transform module minerva.transforms.split_transform module minerva.transforms.tfc module minerva.transforms.transform module minerva.utils module minerva.utils.deprecated module minerva.utils.instantiators module minerva.utils.output module minerva.utils.position_embedding module minerva.utils.string_ops module minerva.utils.tensor module minerva.utils.typing module minerva.utils.upsample module MinervaDataModule (class in minerva.data.data_modules) (class in minerva.data.data_modules.base) minimum_steps (minerva.models.ssl.cpc.CPC attribute) mla_channels (minerva.models.nets.image.vit.VIT_MLAHead attribute) MLAHead (class in minerva.models.nets.image.vit) mlahead (minerva.models.nets.image.vit.VIT_MLAHead attribute) mlahead_channels (minerva.models.nets.image.vit.VIT_MLAHead attribute) MLP (class in minerva.models.nets) (class in minerva.models.nets.mlp) mlp (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) (minerva.models.nets.lfr_har_architectures.LFR_HAR_Projector attribute) mlp_act (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) mlp_drop (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) mlp_out_proj (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) MMAdaptivePadding (class in minerva.models.nets.image.vit) MMDropPath (class in minerva.models.nets.image.setr) MMFFN (class in minerva.models.nets.image.vit) MMMultiheadAttention (class in minerva.models.nets.image.vit) MMPatchEmbed (class in minerva.models.nets.image.vit) MMTransformerEncoderLayer (class in minerva.models.nets.image.vit) MoCoRandomAugmentations (class in minerva.transforms.moco_augmentations) mode (minerva.losses.dice.DiceLoss attribute) (minerva.utils.upsample.Upsample attribute) model (minerva.engines.patch_inferencer_engine.PatchInferencer attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencer attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) (minerva.models.nets.cpc_networks.HARPredictionHead attribute) (minerva.models.nets.diet_linear.AdaptedHead attribute) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) (minerva.models.nets.tnc.Discriminator_TNC attribute) (minerva.pipelines.experiment.InstantiatedModel attribute) (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline property) model_config (minerva.pipelines.experiment.Experiment attribute) ModelConfig (class in minerva.pipelines.experiment) ModelInformation (class in minerva.pipelines.experiment) ModelInstantiator (class in minerva.pipelines.experiment) module minerva minerva.analysis minerva.analysis.clustering_analysis minerva.analysis.complexity_performance_analysis minerva.analysis.metrics minerva.analysis.metrics.balanced_accuracy minerva.analysis.metrics.pixel_accuracy minerva.analysis.model_analysis minerva.callback.embedding_logger_callback minerva.callback.specific_checkpoint_callback minerva.cli minerva.cli.experiment minerva.data minerva.data.data_module_tools minerva.data.data_modules minerva.data.data_modules.base minerva.data.data_modules.datamodule_descriptor minerva.data.data_modules.har minerva.data.data_modules.har_rodrigues_24 minerva.data.data_modules.har_xu_23 minerva.data.datasets minerva.data.datasets.base minerva.data.datasets.binary_tree_subset minerva.data.datasets.context_dataset minerva.data.datasets.har_rodrigues_24 minerva.data.datasets.har_xu_23 minerva.data.datasets.series_dataset minerva.data.readers minerva.data.readers.base_file_iterator minerva.data.readers.csv_reader minerva.data.readers.index_reader minerva.data.readers.mdio_reader minerva.data.readers.multi_reader minerva.data.readers.numpy_reader minerva.data.readers.patched_array_reader minerva.data.readers.png_reader minerva.data.readers.reader minerva.data.readers.tabular_reader minerva.data.readers.text_reader minerva.data.readers.tiff_reader minerva.data.readers.zarr_reader minerva.engines.engine minerva.engines.patch_inferencer_engine minerva.engines.slidingwindow_inferencer_engine minerva.losses minerva.losses._functional minerva.losses.batchwise_barlowtwins_loss minerva.losses.dice minerva.losses.negative_cossine_similatiry minerva.losses.ntxent_loss_poly minerva.losses.topological_loss minerva.losses.weighted_dice_loss minerva.losses.xtent_loss minerva.models minerva.models.adapters minerva.models.finetune_adapters minerva.models.loaders minerva.models.nets minerva.models.nets.base minerva.models.nets.classic_ml_pipeline minerva.models.nets.conv_autoencoders_encoders minerva.models.nets.cpc_networks minerva.models.nets.dcnn minerva.models.nets.diet_linear minerva.models.nets.image.deeplabv3 minerva.models.nets.image.setr minerva.models.nets.image.unet minerva.models.nets.image.unetplusplus_resnet50 minerva.models.nets.image.vit minerva.models.nets.image.vit_local minerva.models.nets.image.vit_local.patch_embed minerva.models.nets.image.vit_local.vit minerva.models.nets.image.wisenet minerva.models.nets.lfr_har_architectures minerva.models.nets.mlp minerva.models.nets.siamese_network_wrapper minerva.models.nets.tfc minerva.models.nets.time_series.cnns minerva.models.nets.time_series.imu_transformer minerva.models.nets.time_series.inception_time minerva.models.nets.time_series.resnet minerva.models.nets.time_series.ts2vec_classifier minerva.models.nets.tnc minerva.models.ssl minerva.models.ssl.autoencoder minerva.models.ssl.barlowtwins minerva.models.ssl.byol minerva.models.ssl.cpc minerva.models.ssl.diet minerva.models.ssl.fastsiam minerva.models.ssl.lfr minerva.models.ssl.simclr minerva.models.ssl.simsiam minerva.models.ssl.tfc minerva.models.ssl.tnc minerva.models.ssl.topological_autoencoder minerva.models.ssl.vitmae minerva.optimizers minerva.optimizers.lars minerva.optimizers.lr_schedulers minerva.pipelines minerva.pipelines.base minerva.pipelines.experiment minerva.pipelines.lightning_pipeline minerva.samplers minerva.samplers.domain_sampler minerva.schedulers.warmup_cosine_annealing minerva.transforms minerva.transforms.activity_image minerva.transforms.context_transform minerva.transforms.moco_augmentations minerva.transforms.random_transform minerva.transforms.split_transform minerva.transforms.tfc minerva.transforms.transform minerva.utils minerva.utils.deprecated minerva.utils.instantiators minerva.utils.output minerva.utils.position_embedding minerva.utils.string_ops minerva.utils.tensor minerva.utils.typing minerva.utils.upsample module (minerva.models.nets.tfc.IgnoreWhenBatch1 attribute) ModuleExtractor (class in minerva.models.loaders) momentum (minerva.models.ssl.fastsiam.FastSiam attribute) MULTICLASS_MODE (in module minerva.losses.dice) MultiClassDiceCELoss (class in minerva.losses.dice) MULTILABEL_MODE (in module minerva.losses.dice) MultiModalHARSeriesDataModule (class in minerva.data.data_modules.har) MultiModalSeriesCSVDataset (class in minerva.data.datasets.series_dataset) MultiReader (class in minerva.data.readers.multi_reader) N n_channels (minerva.models.nets.image.unet._UNet attribute) n_components (minerva.analysis.model_analysis.TSNEAnalysis attribute) n_domains_per_sample (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.samplers.domain_sampler.RandomDomainSampler attribute) n_repetitions (minerva.transforms.Repeat attribute) (minerva.transforms.transform.Repeat attribute) name (minerva.pipelines.experiment.ModelInformation attribute) nb_filters (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) NegativeCosineSimilarity (class in minerva.losses.negative_cossine_similatiry) net (minerva.models.nets.tnc.DilatedConvEncoder attribute) nn (minerva.models.nets.tnc.RnnEncoder attribute) no_embed_class (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) norm (minerva.models.nets.image.setr._SETRUPHead attribute) (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed attribute) (minerva.models.nets.image.vit_local.PatchEmbed attribute) norm1 (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) norm2 (minerva.models.nets.image.vit_local.Block attribute) (minerva.models.nets.image.vit_local.vit.Block attribute) (minerva.models.nets.image.vit_local.vit.ResPostBlock attribute) norm_cfg (minerva.models.nets.image.vit.VIT_MLAHead attribute) norm_pix_loss (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) norm_pre (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) norm_shape() (in module minerva.data.datasets.har_rodrigues_24) Normalize (class in minerva.transforms) (class in minerva.transforms.transform) normalize (minerva.losses.batchwise_barlowtwins_loss.BatchWiseBarlowTwinLoss attribute) normalize_labels (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) NTXentLoss (class in minerva.losses.xtent_loss) NTXentLoss_poly (class in minerva.losses.ntxent_loss_poly) num_channels_reduced (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) num_classes (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy attribute) (minerva.analysis.metrics.BalancedAccuracy attribute) (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.losses.weighted_dice_loss.WeightedDiceLoss attribute) (minerva.models.nets.cpc_networks.LinearClassifier attribute) (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) (minerva.models.nets.image.vit.VIT_MLAHead attribute) (minerva.models.nets.SETR_PUP attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_1D attribute) (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.ssl.fastsiam.FastSiam attribute) (minerva.models.ssl.tfc.TFC_Model attribute) (minerva.pipelines.experiment.ModelInformation attribute) num_data (minerva.models.ssl.diet.DIET attribute) NUM_DEBUG_BATCHES (minerva.pipelines.experiment.Experiment attribute) NUM_DEBUG_EPOCHS (minerva.pipelines.experiment.Experiment attribute) num_heads (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) num_layers (minerva.models.nets.tnc.RnnEncoder attribute) num_nodes (minerva.pipelines.experiment.Experiment attribute) num_parallel (minerva.models.nets.image.vit_local.vit.ParallelThingsBlock attribute) num_predict_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_prefix_tokens (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) num_reg_tokens (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) num_residual_blocks (minerva.models.nets.time_series.resnet._ResNet1D attribute) num_samples (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) num_splits (minerva.transforms.split_transform.SplitTransform attribute) num_steps_prediction (minerva.models.ssl.cpc.CPC attribute) num_targets (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) num_test_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_train_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_val_samples (minerva.data.data_module_tools.RandomDataModule attribute) num_workers (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.data_modules.har_xu_23.HarDataModule attribute) NumpyArrayReader (class in minerva.data.readers) (class in minerva.data.readers.numpy_reader) NumpyFolderReader (class in minerva.data.readers) (class in minerva.data.readers.numpy_reader) O octaves (minerva.transforms.PerlinMasker attribute) (minerva.transforms.transform.PerlinMasker attribute) on_train_batch_end() (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) on_train_batch_start() (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) on_train_epoch_end() (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback method) (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) on_train_epoch_start() (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) on_train_start() (minerva.callback.embedding_logger_callback.EmbeddingLoggerCallback method) (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback method) one_hot_encoding() (minerva.transforms.tfc.TFC_Transforms method) opp_sliding_window() (in module minerva.data.datasets.har_rodrigues_24) optimizer (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) optimizer_kwargs (minerva.models.nets.base.SimpleSupervisedModel attribute) (minerva.models.nets.SimpleSupervisedModel attribute) original_module (minerva.models.finetune_adapters.LoRA attribute) original_resolution (minerva.models.nets.image.vit.SetrVitBackbone attribute) out_channels (minerva.models.nets.image.wisenet._WiseNet attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) out_features (minerva.models.nets.diet_linear.DIETLinear attribute) out_tensor_shape (minerva.models.nets.time_series.inception_time.ShortcutLayer attribute) outc (minerva.models.nets.image.unet._UNet attribute) output_cls_token (minerva.models.nets.image.vit.SetrVitBackbone attribute) output_dims (minerva.models.nets.tnc.TSEncoder attribute) output_filename (minerva.analysis.model_analysis.TSNEAnalysis attribute) output_fmt (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed attribute) (minerva.models.nets.image.vit_local.PatchEmbed attribute) output_shape (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) (minerva.models.nets.DeepLabV3 attribute) (minerva.models.nets.image.deeplabv3.DeepLabV3 attribute) (minerva.pipelines.experiment.ModelInformation attribute) output_simplified_shape (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) output_size (minerva.transforms.Crop attribute) (minerva.transforms.transform.Crop attribute) P p (minerva.losses.topological_loss.TopologicalLoss attribute) pad (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) pad_at (minerva.models.nets.time_series.cnns.CNN_HaEtAl_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_2D attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.nets.time_series.cnns.ZeroPadder2D attribute) pad_kwargs (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) pad_mode (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.transforms.Crop attribute) (minerva.transforms.random_transform.RandomCrop attribute) (minerva.transforms.RandomCrop attribute) (minerva.transforms.transform.Crop attribute) pad_width (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) PadCrop (class in minerva.transforms) (class in minerva.transforms.transform) Padding (class in minerva.transforms) (class in minerva.transforms.transform) padding (minerva.models.nets.image.vit.MMAdaptivePadding attribute) padding_mode (minerva.transforms.PadCrop attribute) (minerva.transforms.Padding attribute) (minerva.transforms.transform.PadCrop attribute) (minerva.transforms.transform.Padding attribute) padding_size (minerva.models.nets.time_series.cnns.ZeroPadder2D attribute) padding_value (minerva.transforms.Padding attribute) (minerva.transforms.transform.Padding attribute) ParallelScalingBlock (class in minerva.models.nets.image.vit_local.vit) ParallelThingsBlock (class in minerva.models.nets.image.vit_local.vit) parse_num_workers() (in module minerva.data.data_modules.har) parse_transforms() (in module minerva.data.data_modules.har) ParserException patch_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.nets.image.vit.SetrVitBackbone attribute) (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) patch_size (minerva.models.nets.image.vit.SetrVitBackbone attribute) (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed attribute) (minerva.models.nets.image.vit_local.PatchEmbed attribute) (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) PatchedArrayReader (class in minerva.data.readers) (class in minerva.data.readers.patched_array_reader) PatchedMDIOReader (class in minerva.data.readers) (class in minerva.data.readers.mdio_reader) PatchedZarrReader (class in minerva.data.readers) (class in minerva.data.readers.zarr_reader) PatchEmbed (class in minerva.models.nets.image.vit_local) (class in minerva.models.nets.image.vit_local.patch_embed) patchify() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) PatchInferencer (class in minerva.engines.patch_inferencer_engine) PatchInferencerEngine (class in minerva.engines.patch_inferencer_engine) path (minerva.analysis.model_analysis._ModelAnalysis property) (minerva.data.readers.LazyPaddedPatchedZarrReader attribute) (minerva.data.readers.PatchedZarrReader attribute) (minerva.data.readers.zarr_reader.LazyPaddedPatchedZarrReader attribute) (minerva.data.readers.zarr_reader.PatchedZarrReader attribute) PathLike (in module minerva.utils.typing) paths (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) per_sample_evaluation_metrics (minerva.pipelines.experiment.Experiment attribute) perform_evaluation() (in module minerva.pipelines.experiment) perform_predict() (in module minerva.pipelines.experiment) perform_train() (in module minerva.pipelines.experiment) PerlinMasker (class in minerva.transforms) (class in minerva.transforms.transform) permutation (minerva.models.adapters.PermuteAdapter attribute) permute (minerva.models.nets.cpc_networks.ResNetEncoder attribute) (minerva.models.nets.lfr_har_architectures.HARSCnnEncoder attribute) (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) (minerva.models.nets.tnc.RnnEncoder attribute) (minerva.models.nets.tnc.TSEncoder attribute) PermuteAdapter (class in minerva.models.adapters) PersistentHomologyCalculation (class in minerva.losses.topological_loss) Pipeline (class in minerva.pipelines) (class in minerva.pipelines.base) pipeline (minerva.models.ssl.tfc.TFC_Model attribute) pipeline_id (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) pipeline_info (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) PixelAccuracy (class in minerva.analysis.metrics) (class in minerva.analysis.metrics.pixel_accuracy) PNGReader (class in minerva.data.readers) (class in minerva.data.readers.png_reader) PolyLRScheduler (class in minerva.optimizers.lr_schedulers) pool1 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) pool2 (minerva.models.nets.dcnn.DCNN attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) pool3 (minerva.models.nets.image.wisenet._WiseNet attribute) pool4 (minerva.models.nets.image.wisenet._WiseNet attribute) pos_drop (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) pos_embed (minerva.models.nets.image.vit.MaskedAutoencoderViT attribute) (minerva.models.nets.image.vit.SetrVitBackbone attribute) possible_axis (minerva.transforms.random_transform.RandomFlip attribute) (minerva.transforms.RandomFlip attribute) power (minerva.optimizers.lr_schedulers.PolyLRScheduler attribute) predict_batch() (in module minerva.pipelines.lightning_pipeline) predict_data (minerva.data.data_module_tools.RandomDataModule attribute) predict_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.data.data_modules.MinervaDataModule method) predict_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.MinervaDataModule property) predict_proba (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) predict_split (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) predict_step() (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.vit.SFM_BasePatch16_Downstream method) (minerva.models.nets.image.wisenet.WiseNet method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.nets.WiseNet method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.tfc.TFC_Model method) prediction_branch_predictor (minerva.models.ssl.fastsiam.FastSiam attribute) prediction_branch_projector (minerva.models.ssl.fastsiam.FastSiam attribute) prediction_head (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) prediction_paths (minerva.pipelines.experiment.Experiment property) PredictionNetwork (class in minerva.models.nets.cpc_networks) predictor_training_epochs (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) predictors (minerva.models.ssl.cpc.CPC attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) preprocess (minerva.data.readers.multi_reader.MultiReader attribute) pretrained_backbone_ckpt_path (minerva.pipelines.experiment.Experiment attribute) prob (minerva.transforms.random_transform.RandomFlip attribute) (minerva.transforms.random_transform.RandomGrayScale attribute) (minerva.transforms.random_transform.RandomRotation attribute) (minerva.transforms.random_transform.RandomSolarize attribute) (minerva.transforms.RandomFlip attribute) (minerva.transforms.RandomGrayScale attribute) (minerva.transforms.RandomRotation attribute) (minerva.transforms.RandomSolarize attribute) processed_data_dir (minerva.data.data_modules.har_xu_23.HarDataModule attribute) profiler (minerva.pipelines.experiment.Experiment attribute) progress_bar_refresh_rate (minerva.pipelines.experiment.Experiment attribute) proj (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed attribute) (minerva.models.nets.image.vit_local.PatchEmbed attribute) (minerva.models.nets.image.vit_local.vit.Attention attribute) proj0 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) proj1 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) proj2 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) proj3 (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) proj_drop (minerva.models.nets.image.vit.MMMultiheadAttention attribute) (minerva.models.nets.image.vit_local.vit.Attention attribute) projection (minerva.models.nets.image.vit.MMPatchEmbed attribute) projection_head (minerva.models.ssl.barlowtwins.BarlowTwins attribute) (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) (minerva.models.ssl.tnc.TNC attribute) projection_head_momentum (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) projector (minerva.models.nets.tfc.TFC_Standard_Projector attribute) (minerva.models.nets.tnc.ConvBlock attribute) (minerva.models.ssl.SimCLR attribute) (minerva.models.ssl.simclr.SimCLR attribute) projectors (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) proportional_jitter() (minerva.transforms.tfc.TFC_Transforms method) Q q_norm (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) qkv (minerva.models.nets.image.vit_local.vit.Attention attribute) R random_masking() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) RandomCrop (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomDataModule (class in minerva.data.data_module_tools) RandomDomainSampler (class in minerva.samplers.domain_sampler) RandomFlip (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomGrayScale (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomResize (class in minerva.transforms.random_transform) RandomRotation (class in minerva.transforms) (class in minerva.transforms.random_transform) RandomSolarize (class in minerva.transforms) (class in minerva.transforms.random_transform) ratio_range (minerva.transforms.random_transform.RandomResize attribute) readers (minerva.data.datasets.base.SimpleDataset attribute) (minerva.data.datasets.context_dataset.ContextDataset attribute) (minerva.data.datasets.SimpleDataset attribute) receptive_field (minerva.models.nets.tnc.SamePadConv attribute) reconstruction_loss (minerva.models.ssl.autoencoder.Autoencoder attribute) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) reduction_ratio (minerva.models.nets.time_series.resnet._ResNet1D attribute) (minerva.models.nets.time_series.resnet.SqueezeAndExcitation1D attribute) reg_token (minerva.models.nets.image.vit_local.VisionTransformer attribute) (minerva.models.nets.image.vit_local.vit.VisionTransformer attribute) relu (minerva.models.nets.cpc_networks.ConvBlock attribute) (minerva.models.nets.image.unetplusplus_resnet50.DeepLabV3ResNet50Backbone attribute) (minerva.models.nets.image.wisenet._WiseNet attribute) remove (minerva.models.nets.tnc.SamePadConv attribute) remove_frequency() (minerva.transforms.tfc.TFC_Transforms method) Repeat (class in minerva.transforms) (class in minerva.transforms.transform) RepeatedModuleList (class in minerva.models.ssl) (class in minerva.models.ssl.lfr) repr_dropout (minerva.models.nets.tnc.TSEncoder attribute) resample_patch_embed() (in module minerva.models.nets.image.vit_local.patch_embed) resample_signals() (minerva.transforms.activity_image.ActivityImageTransforms method) Reshape (class in minerva.transforms.transform) residual_blocks (minerva.models.nets.time_series.resnet._ResNet1D attribute) Resize (class in minerva.transforms.transform) resize (minerva.transforms.random_transform.RandomResize attribute) resize() (in module minerva.utils.upsample) resize_pos_embed() (in module minerva.models.nets.image.vit_local.vit) (minerva.models.nets.image.vit.SetrVitBackbone static method) ResNet1D_5 (class in minerva.models.nets.time_series.resnet) ResNet1D_8 (class in minerva.models.nets.time_series.resnet) ResNet1DBase (class in minerva.models.nets.time_series.resnet) ResNetBlock (class in minerva.models.nets.time_series.resnet) ResNetEncoder (class in minerva.models.nets.cpc_networks) (class in minerva.models.nets.tnc) ResNetSE1D_5 (class in minerva.models.nets.time_series.resnet) ResNetSE1D_8 (class in minerva.models.nets.time_series.resnet) ResNetSEBlock (class in minerva.models.nets.time_series.resnet) ResPostBlock (class in minerva.models.nets.image.vit_local.vit) result (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) results_paths (minerva.pipelines.experiment.Experiment property) return_logits (minerva.pipelines.experiment.ModelInformation attribute) return_single (minerva.data.datasets.base.SimpleDataset attribute) (minerva.data.datasets.SimpleDataset attribute) (minerva.data.readers.tabular_reader.TabularReader attribute) (minerva.data.readers.TabularReader attribute) return_tuple (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) reverse (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) RN50model (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone attribute) rng (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.datasets.base.FractionalRandomSubset attribute) (minerva.samplers.domain_sampler.RandomDomainSampler attribute) (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.context_transform.ClassRatioCrop attribute) (minerva.transforms.PadCrop attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) (minerva.transforms.transform.PadCrop attribute) rnn (minerva.models.nets.cpc_networks.HARCPCAutoregressive attribute) (minerva.models.nets.tnc.RnnEncoder attribute) RnnEncoder (class in minerva.models.nets.tnc) root_dir (minerva.data.readers.numpy_reader.NumpyFolderReader attribute) (minerva.data.readers.NumpyFolderReader attribute) (minerva.data.readers.png_reader.PNGReader attribute) (minerva.data.readers.PNGReader attribute) (minerva.data.readers.text_reader.TextReader attribute) (minerva.data.readers.TextReader attribute) (minerva.data.readers.tiff_reader.TiffReader attribute) (minerva.data.readers.TiffReader attribute) root_log_dir (minerva.pipelines.experiment.Experiment attribute) roots() (minerva.losses.topological_loss.UnionFind method) Rotation (class in minerva.transforms) (class in minerva.transforms.transform) run() (minerva.pipelines.base.Pipeline method) (minerva.pipelines.Pipeline method) run_id (minerva.pipelines.experiment.Experiment property) run_status (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) S SamePadConv (class in minerva.models.nets.tnc) samples_per_class (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) saturation (minerva.transforms.ColorJitter attribute) (minerva.transforms.transform.ColorJitter attribute) save_predictions (minerva.pipelines.experiment.Experiment attribute) save_predictions() (in module minerva.pipelines.experiment) save_results (minerva.pipelines.experiment.Experiment attribute) save_results() (in module minerva.pipelines.experiment) scale (minerva.models.nets.image.vit_local.vit.Attention attribute) (minerva.models.nets.image.vit_local.vit.ParallelScalingBlock attribute) (minerva.transforms.PerlinMasker attribute) (minerva.transforms.transform.PerlinMasker attribute) scaling (minerva.models.finetune_adapters.LoRA attribute) schedule_length (minerva.models.ssl.BYOL attribute) (minerva.models.ssl.byol.BYOL attribute) seed (minerva.analysis.model_analysis.TSNEAnalysis attribute) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.datasets.base.FractionalRandomSubset attribute) (minerva.pipelines.base.Pipeline attribute) (minerva.pipelines.experiment.Experiment attribute) (minerva.pipelines.Pipeline attribute) (minerva.samplers.domain_sampler.RandomDomainSampler attribute) (minerva.transforms.PadCrop attribute) (minerva.transforms.transform.PadCrop attribute) segmentation_head (minerva.models.nets.image.vit.VisionTransformer attribute) SegmentationHead (class in minerva.models.nets.image.vit) select_transform() (minerva.transforms._RandomSyncedTransform method) (minerva.transforms.random_transform._RandomSyncedTransform method) (minerva.transforms.random_transform.RandomCrop method) (minerva.transforms.random_transform.RandomFlip method) (minerva.transforms.random_transform.RandomGrayScale method) (minerva.transforms.random_transform.RandomResize method) (minerva.transforms.random_transform.RandomRotation method) (minerva.transforms.random_transform.RandomSolarize method) (minerva.transforms.RandomCrop method) (minerva.transforms.RandomFlip method) (minerva.transforms.RandomGrayScale method) (minerva.transforms.RandomRotation method) (minerva.transforms.RandomSolarize method) selection_batch_size (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) SeriesFolderCSVDataset (class in minerva.data.datasets.series_dataset) set_input_size() (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed method) (minerva.models.nets.image.vit_local.PatchEmbed method) (minerva.models.nets.image.vit_local.VisionTransformer method) (minerva.models.nets.image.vit_local.vit.VisionTransformer method) set_path() (minerva.analysis.model_analysis.TSNEAnalysis method) SETR_PUP (class in minerva.models.nets) (class in minerva.models.nets.image.setr) SetrVitBackbone (class in minerva.models.nets.image.vit) setup() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.models.ssl.diet.DIET method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) SFM_BasePatch16_Downstream (class in minerva.models.nets.image.vit) shape (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.transforms.transform.Reshape attribute) shared_part (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) ShortcutLayer (class in minerva.models.nets.time_series.inception_time) shuffle (minerva.samplers.domain_sampler.RandomDomainSampler attribute) shuffle_train (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) SiameseNetworkWrapper (class in minerva.models.nets.siamese_network_wrapper) sig_error() (minerva.losses.topological_loss.TopologicalSignatureDistance static method) signal_samples (minerva.transforms.activity_image.ActivityImageTransforms attribute) signal_sequences (minerva.transforms.activity_image.ActivityImageTransforms attribute) signature_calculator (minerva.losses.topological_loss.TopologicalSignatureDistance attribute) SimCLR (class in minerva.models.ssl) (class in minerva.models.ssl.simclr) similarity_function (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) SimpleDataset (class in minerva.data.data_module_tools) (class in minerva.data.datasets) (class in minerva.data.datasets.base) SimpleLightningPipeline (class in minerva.pipelines.lightning_pipeline) SimpleSupervisedModel (class in minerva.models.nets) (class in minerva.models.nets.base) SimSiam (class in minerva.models.ssl.simsiam) SimSiamMLPHead (class in minerva.models.ssl.fastsiam) size (minerva.utils.upsample.Upsample attribute) sklearn_model_save_path (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) SklearnPipeline (class in minerva.models.nets.classic_ml_pipeline) sliding_window() (in module minerva.data.datasets.har_rodrigues_24) SlidingWindowInferencer (class in minerva.engines.slidingwindow_inferencer_engine) SlidingWindowInferencerEngine (class in minerva.engines.slidingwindow_inferencer_engine) smooth (minerva.losses.dice.DiceLoss attribute) (minerva.losses.weighted_dice_loss.BinaryWeightedDiceLoss attribute) (minerva.losses.weighted_dice_loss.WeightedDiceLoss attribute) softmax (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.models.ssl.cpc.CPC attribute) Solarize (class in minerva.transforms) (class in minerva.transforms.transform) sort_method (minerva.data.readers.base_file_iterator.BaseFileIterator attribute) sort_selected (minerva.losses.topological_loss.AlephPersistenHomologyCalculation attribute) specific_epochs (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback attribute) specific_steps (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback attribute) SpecificCheckpointCallback (class in minerva.callback.specific_checkpoint_callback) split_dimension (minerva.transforms.split_transform.SplitTransform attribute) SplitTransform (class in minerva.transforms.split_transform) Squeeze (class in minerva.transforms) (class in minerva.transforms.transform) squeeze (minerva.models.nets.tnc.RnnEncoder attribute) squeeze_loss (minerva.models.nets.DeepLabV3 attribute) (minerva.models.nets.image.deeplabv3.DeepLabV3 attribute) SqueezeAndExcitation1D (class in minerva.models.nets.time_series.resnet) status (minerva.pipelines.experiment.Experiment property) std (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) step() (minerva.optimizers.LARS method) (minerva.optimizers.lars.LARS method) step_var_name (minerva.callback.specific_checkpoint_callback.SpecificCheckpointCallback attribute) strategy (minerva.pipelines.experiment.Experiment attribute) stream (minerva.utils.output.Tee attribute) strict_img_size (minerva.models.nets.image.vit_local.patch_embed.PatchEmbed attribute) (minerva.models.nets.image.vit_local.PatchEmbed attribute) stride (minerva.data.readers.patched_array_reader.PatchedArrayReader attribute) (minerva.data.readers.PatchedArrayReader attribute) (minerva.models.nets.image.vit.MMAdaptivePadding attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) strides (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) Subset (class in minerva.data.datasets.base) system_info (minerva.pipelines.base.Pipeline property) (minerva.pipelines.Pipeline property) T T (in module minerva.utils.instantiators) (minerva.data.datasets.har_xu_23.TNCDataset attribute) TabularReader (class in minerva.data.readers) (class in minerva.data.readers.tabular_reader) target_branch_backbone (minerva.models.ssl.fastsiam.FastSiam attribute) target_branch_projector (minerva.models.ssl.fastsiam.FastSiam attribute) target_channels (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) target_column (minerva.data.datasets.har_xu_23.HarDataset attribute) target_h_size (minerva.transforms.context_transform.ClassRatioCrop attribute) (minerva.transforms.PadCrop attribute) (minerva.transforms.Padding attribute) (minerva.transforms.transform.PadCrop attribute) (minerva.transforms.transform.Padding attribute) (minerva.transforms.transform.Resize attribute) target_scale (minerva.transforms.random_transform.RandomResize attribute) target_time_steps (minerva.models.nets.conv_autoencoders_encoders.ConvTAEDecoder attribute) target_w_size (minerva.transforms.context_transform.ClassRatioCrop attribute) (minerva.transforms.PadCrop attribute) (minerva.transforms.Padding attribute) (minerva.transforms.transform.PadCrop attribute) (minerva.transforms.transform.Padding attribute) (minerva.transforms.transform.Resize attribute) task (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy attribute) (minerva.analysis.metrics.BalancedAccuracy attribute) task_type (minerva.pipelines.experiment.ModelInformation attribute) Tee (class in minerva.utils.output) temperature (minerva.losses.ntxent_loss_poly.NTXentLoss_poly attribute) (minerva.losses.xtent_loss.NTXentLoss attribute) tensor1 (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) test_accuracy (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) test_data (minerva.data.data_module_tools.RandomDataModule attribute) test_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC method) (minerva.data.data_modules.har_xu_23.HarDataModule method) (minerva.data.data_modules.MinervaDataModule method) test_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.datamodule_descriptor.DataModuleDescriptor attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.data_modules.MinervaDataModule property) test_f1 (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) test_metric (minerva.models.ssl.fastsiam.FastSiam attribute) test_metrics (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) test_miou (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) test_precision (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) test_recall (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 attribute) test_step() (minerva.engines.engine._Inferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.fastsiam.FastSiam method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) text_size (minerva.analysis.model_analysis.TSNEAnalysis attribute) TextReader (class in minerva.data.readers) (class in minerva.data.readers.text_reader) TFC_Backbone (class in minerva.models.nets.tfc) TFC_Conv_Block (class in minerva.models.nets.tfc) TFC_Model (class in minerva.models.ssl.tfc) TFC_PredicionHead (class in minerva.models.nets.tfc) TFC_Standard_Projector (class in minerva.models.nets.tfc) TFC_Transforms (class in minerva.transforms.tfc) threshold (minerva.transforms.random_transform.RandomSolarize attribute) (minerva.transforms.RandomSolarize attribute) (minerva.transforms.Solarize attribute) (minerva.transforms.transform.Solarize attribute) TiffReader (class in minerva.data.readers) (class in minerva.data.readers.tiff_reader) time_encoder (minerva.models.nets.tfc.TFC_Backbone attribute) time_projector (minerva.models.nets.tfc.TFC_Backbone attribute) time_series (minerva.data.datasets.har_xu_23.TNCDataset attribute) time_steps (minerva.models.nets.conv_autoencoders_encoders.ConvTAEEncoder attribute) timestamp_now() (in module minerva.cli.experiment) (in module minerva.pipelines.experiment) title (minerva.analysis.model_analysis.TSNEAnalysis attribute) TNC (class in minerva.models.ssl.tnc) TNCDataset (class in minerva.data.datasets.har_xu_23) to_rgb (minerva.transforms.Normalize attribute) (minerva.transforms.transform.Normalize attribute) to_tensor() (in module minerva.utils.tensor) topological_loss (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder attribute) topological_signature_distance (minerva.losses.topological_loss.TopologicalLoss attribute) TopologicalAutoencoder (class in minerva.models.ssl.topological_autoencoder) TopologicalLoss (class in minerva.losses.topological_loss) TopologicalSignatureDistance (class in minerva.losses.topological_loss) total_epochs (minerva.schedulers.warmup_cosine_annealing.WarmupCosineAnnealingLR attribute) train_data (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) train_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC method) (minerva.data.data_modules.har_xu_23.HarDataModule method) (minerva.data.data_modules.MinervaDataModule method) train_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.datamodule_descriptor.DataModuleDescriptor attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.data_modules.MinervaDataModule property) train_y (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) trainer (minerva.pipelines.lightning_pipeline.SimpleLightningPipeline property) training_metrics (minerva.pipelines.experiment.Experiment property) training_metrics_path (minerva.pipelines.experiment.Experiment property) training_step() (minerva.engines.engine._Inferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.barlowtwins.BarlowTwins method) (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.diet.DIET method) (minerva.models.ssl.fastsiam.FastSiam method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.simsiam.SimSiam method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) transform (minerva.data.datasets.context_dataset.ContextDataset attribute) (minerva.models.nets.tfc.TFC_Backbone attribute) (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.context_transform.DataOnlyTransform attribute) (minerva.transforms.ContrastiveTransform attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) (minerva.transforms.transform.ContrastiveTransform attribute) transformations_executed (minerva.transforms._RandomSyncedTransform attribute) (minerva.transforms.random_transform._RandomSyncedTransform attribute) transformer_dim (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) transformer_encoder (minerva.models.nets.time_series.imu_transformer._IMUTransformerEncoder attribute) TransformPipeline (class in minerva.transforms) (class in minerva.transforms.transform) transforms (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har.UserActivityFolderDataModule attribute) (minerva.data.datasets.base.SimpleDataset attribute) (minerva.data.datasets.series_dataset.MultiModalSeriesCSVDataset attribute) (minerva.data.datasets.series_dataset.SeriesFolderCSVDataset attribute) (minerva.data.datasets.SimpleDataset attribute) (minerva.transforms.context_transform.ContextTransformPipeline attribute) (minerva.transforms.transform.TransformPipeline attribute) (minerva.transforms.TransformPipeline attribute) Transpose (class in minerva.transforms) (class in minerva.transforms.transform) transpose_data (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) TransShape() (minerva.models.nets.image.vit.DecoderCup method) tree_like_formating() (in module minerva.utils.string_ops) TS2VecClassifier (class in minerva.models.nets.time_series.ts2vec_classifier) TSEncoder (class in minerva.models.nets.tnc) TSNEAnalysis (class in minerva.analysis.model_analysis) U UNet (class in minerva.models.nets) (class in minerva.models.nets.image.unet) UNetPlusPlusDeepLabV3 (class in minerva.models.nets.image.unetplusplus_resnet50) unfreeze_weights() (minerva.models.nets.image.deeplabv3.DeepLabV3Backbone method) UnionFind (class in minerva.losses.topological_loss) unpatchify() (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) Unsqueeze (class in minerva.transforms) (class in minerva.transforms.transform) up (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) (minerva.models.nets.image.vit.DecoderBlock attribute) up1 (minerva.models.nets.image.unet._UNet attribute) up2 (minerva.models.nets.image.unet._UNet attribute) (minerva.models.nets.image.vit.DecoderCup attribute) up3 (minerva.models.nets.image.unet._UNet attribute) (minerva.models.nets.image.vit.DecoderCup attribute) up4 (minerva.models.nets.image.unet._UNet attribute) (minerva.models.nets.image.vit.DecoderCup attribute) up_conv (minerva.models.nets.image.unetplusplus_resnet50.UNetPlusPlusDeepLabV3 attribute) up_convs (minerva.models.nets.image.setr._SETRUPHead attribute) update() (minerva.analysis.metrics.balanced_accuracy.BalancedAccuracy method) (minerva.analysis.metrics.BalancedAccuracy method) (minerva.analysis.metrics.pixel_accuracy.PixelAccuracy method) (minerva.analysis.metrics.PixelAccuracy method) update_momentum() (minerva.models.ssl.BYOL method) (minerva.models.ssl.byol.BYOL method) update_target_branch() (minerva.models.ssl.fastsiam.FastSiam method) upper_part (minerva.models.nets.time_series.cnns.CNN_PF_Backbone attribute) Upsample (class in minerva.utils.upsample) use_bottleneck (minerva.models.nets.time_series.inception_time._InceptionTime attribute) (minerva.models.nets.time_series.inception_time.InceptionModule attribute) use_cycles (minerva.losses.topological_loss.TopologicalSignatureDistance attribute) use_only_train_data (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) use_residual (minerva.models.nets.time_series.inception_time._InceptionTime attribute) use_sliding_inference (minerva.models.nets.image.setr.SETR_PUP attribute) (minerva.models.nets.SETR_PUP attribute) use_train_as_val (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) use_train_as_validation (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) use_val_with_train (minerva.data.data_modules.har.MultiModalHARSeriesDataModule attribute) (minerva.data.data_modules.har_xu_23.HarDataModule attribute) (minerva.data.datasets.har_rodrigues_24.HARDatasetCPC attribute) UserActivityFolderDataModule (class in minerva.data.data_modules.har) using_redirected_outputs() (in module minerva.pipelines.experiment) V val_data (minerva.data.data_module_tools.RandomDataModule attribute) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) val_dataloader() (minerva.data.data_module_tools.RandomDataModule method) (minerva.data.data_modules.base.MinervaDataModule method) (minerva.data.data_modules.har.MultiModalHARSeriesDataModule method) (minerva.data.data_modules.har.UserActivityFolderDataModule method) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC method) (minerva.data.data_modules.har_xu_23.HarDataModule method) (minerva.data.data_modules.MinervaDataModule method) val_dataset (minerva.data.data_modules.base.MinervaDataModule property) (minerva.data.data_modules.datamodule_descriptor.DataModuleDescriptor attribute) (minerva.data.data_modules.har_rodrigues_24.HARDataModuleCPC attribute) (minerva.data.data_modules.MinervaDataModule property) val_y (minerva.models.nets.classic_ml_pipeline.ClassicMLModel attribute) validation_step() (minerva.engines.engine._Inferencer method) (minerva.models.nets.base.SimpleSupervisedModel method) (minerva.models.nets.classic_ml_pipeline.ClassicMLModel method) (minerva.models.nets.cpc_networks.LinearClassifier method) (minerva.models.nets.image.setr.SETR_PUP method) (minerva.models.nets.image.unetplusplus_resnet50.LitUNetPlusPlusDeepLabV3 method) (minerva.models.nets.image.vit.MaskedAutoencoderViT method) (minerva.models.nets.SETR_PUP method) (minerva.models.nets.SimpleSupervisedModel method) (minerva.models.ssl.autoencoder.Autoencoder method) (minerva.models.ssl.barlowtwins.BarlowTwins method) (minerva.models.ssl.cpc.CPC method) (minerva.models.ssl.fastsiam.FastSiam method) (minerva.models.ssl.LearnFromRandomnessModel method) (minerva.models.ssl.lfr.LearnFromRandomnessModel method) (minerva.models.ssl.SimCLR method) (minerva.models.ssl.simclr.SimCLR method) (minerva.models.ssl.simsiam.SimSiam method) (minerva.models.ssl.tfc.TFC_Model method) (minerva.models.ssl.tnc.TNC method) (minerva.models.ssl.topological_autoencoder.TopologicalAutoencoder method) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT method) VisionTransformer (class in minerva.models.nets.image.vit) (class in minerva.models.nets.image.vit_local) (class in minerva.models.nets.image.vit_local.vit) vit_base_patch16_downstream_regression() (in module minerva.models.nets.image.vit) vit_huge_patch14_downstream_regression() (in module minerva.models.nets.image.vit) vit_large_patch16_downstream_regression() (in module minerva.models.nets.image.vit) VIT_MLAHead (class in minerva.models.nets.image.vit) W w (minerva.models.ssl.tnc.TNC attribute) warmup_epochs (minerva.schedulers.warmup_cosine_annealing.WarmupCosineAnnealingLR attribute) WarmupCosineAnnealingLR (class in minerva.schedulers.warmup_cosine_annealing) warn_if_used() (in module minerva.utils.deprecated) wca_scheduler_total_epochs (minerva.models.ssl.diet.DIET attribute) weight_ce (minerva.losses.dice.MultiClassDiceCELoss attribute) weight_decay (minerva.models.ssl.barlowtwins.BarlowTwins attribute) (minerva.models.ssl.diet.DIET attribute) (minerva.models.ssl.LearnFromRandomnessModel attribute) (minerva.models.ssl.lfr.LearnFromRandomnessModel attribute) (minerva.models.ssl.simsiam.SimSiam attribute) (minerva.models.ssl.vitmae.MaskedAutoEncoderViT attribute) weight_dice (minerva.losses.dice.MultiClassDiceCELoss attribute) weight_function (minerva.engines.patch_inferencer_engine.PatchInferencerEngine attribute) (minerva.engines.slidingwindow_inferencer_engine.SlidingWindowInferencerEngine attribute) WeightedDiceLoss (class in minerva.losses.weighted_dice_loss) width (minerva.analysis.model_analysis.TSNEAnalysis attribute) window_size (minerva.data.data_modules.har_xu_23.HarDataModule attribute) (minerva.data.datasets.har_xu_23.TNCDataset attribute) WiseNet (class in minerva.models.nets) (class in minerva.models.nets.image.wisenet) with_cls_token (minerva.models.nets.image.vit.SetrVitBackbone attribute) with_cp (minerva.models.nets.image.vit.MMTransformerEncoderLayer attribute) Wk (minerva.models.nets.cpc_networks.PredictionNetwork attribute) write() (minerva.utils.output.Tee method) write_experiment_config() (in module minerva.cli.experiment) write_html (minerva.analysis.model_analysis.TSNEAnalysis attribute) write_system_info() (in module minerva.cli.experiment) X x_axis_title (minerva.analysis.model_analysis.TSNEAnalysis attribute) Y y_axis_title (minerva.analysis.model_analysis.TSNEAnalysis attribute) Z ZeroPadder2D (class in minerva.models.nets.time_series.cnns)